News:ensembl 93 gtfs and fasta twobits have been added to AnnotationHub
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shepherl 2.8k
@lshep
Last seen 1 day ago
United States

Hello all,

The ensembl 93 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.8

Bioconductor version 3.8 (BiocManager 1.30.1), ?BiocManager::install for help
> library(AnnotationHub) 
> hub = AnnotationHub()
snapshotDate(): 2018-08-01
> length(query(hub, c("ensembl", "gtf", "release-93")))
[1] 288
> length(query(hub, c("fasta", "release-93", "twobit")))
[1] 463
annotationhub ensembl gtf 2bit annotationdata News • 439 views
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