News: ensembl 93 gtfs and fasta twobits have been added to AnnotationHub
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14 months ago by
shepherl ♦♦ 1.6k
United States
shepherl ♦♦ 1.6k wrote:

Hello all,

The ensembl 93 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.8

Bioconductor version 3.8 (BiocManager 1.30.1), ?BiocManager::install for help
> library(AnnotationHub) 
> hub = AnnotationHub()
snapshotDate(): 2018-08-01
> length(query(hub, c("ensembl", "gtf", "release-93")))
[1] 288
> length(query(hub, c("fasta", "release-93", "twobit")))
[1] 463
ADD COMMENTlink written 14 months ago by shepherl ♦♦ 1.6k
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