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News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
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gravatar for shepherl
5 weeks ago by
shepherl ♦♦ 870
United States
shepherl ♦♦ 870 wrote:

Hello all,

The ensembl 94 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.8


Bioconductor version 3.8 (BiocManager 1.30.3), ?BiocManager::install for help

> library(AnnotationHub)

> hub = AnnotationHub()
  |======================================================================| 100%

snapshotDate(): 2018-10-16

> length(query(hub, c("ensembl", "gtf", "release-94")))
[1] 372
> length(query(hub, c("fasta", "release-94", "twobit")))
[1] 615
ADD COMMENTlink written 5 weeks ago by shepherl ♦♦ 870
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