News:ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
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shepherl 4.1k
@lshep
Last seen 7 hours ago
United States

Hello all,

The ensembl 94 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.8


Bioconductor version 3.8 (BiocManager 1.30.3), ?BiocManager::install for help

> library(AnnotationHub)

> hub = AnnotationHub()
  |======================================================================| 100%

snapshotDate(): 2018-10-16

> length(query(hub, c("ensembl", "gtf", "release-94")))
[1] 372
> length(query(hub, c("fasta", "release-94", "twobit")))
[1] 615
annotationdata annotationhub ensembl gtf 2bit News • 1.2k views
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