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I seem to be running into a bug with GenomicFeatures installation for Bioconductor 3.8 (Red Hat Linux 3.10.0-957.el7.x86_64):
> BiocManager::install("GenomicFeatures", version = "3.8") Bioconductor version 3.8 (BiocManager 1.30.3), R 3.5.1 (2018-07-02) Installing package(s) 'GenomicFeatures' Warning: package ‘GenomicFeatures’ is not available (for R version 3.5.1)
All other Bioconductor packages install correctly on my machine, and I can install GenomicFeatures from the GitHub repo. It seems to be an issue specific to BiocManager.
Best,
Mike