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Showing :
biocmanager
•
reset
5
votes
2
replies
297
views
can't install DESeq2 ("unable to access index for repository")
biocmanager
DESeq2
6 weeks ago
Alessia
▴ 40
3
votes
5
replies
441
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 10 weeks ago by
Vincent J. Carey, Jr.
6.7k • written 10 weeks ago by
Ndimensional
▴ 20
0
votes
4
replies
445
views
Unable to install BiocManager
Biocmanager
R
updated 5 months ago by
L
▴ 50 • written 5 months ago by
sidrah19220
• 0
0
votes
2
replies
1.9k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor
BioCManager
ChIPseeker
updated 9 months ago by
James W. MacDonald
63k • written 9 months ago by
ASIF
• 0
2
votes
4
replies
1.2k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 10 months ago by
abhisek001
• 0
0
votes
2
replies
429
views
abs() error in rstudio
Bioconductor
BiocManager
abs()
Bioinformatics
written 10 months ago by
sue
• 0
1
vote
3
replies
4.1k
views
Not able to install packages in Bioconductor version '3.16'
Install
BiocManager
version3.16
updated 8 months ago by
shepherl
3.5k • written 10 months ago by
Tonmoya
• 0
0
votes
3
replies
747
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 10 months ago by
Vincent J. Carey, Jr.
6.7k • written 10 months ago by
i.am.filippov
• 0
0
votes
4
replies
516
views
Error installing Bioc
clusterProfiler
Bioconductor
BiocManager
updated 11 months ago by
Guido Hooiveld
★ 3.7k • written 11 months ago by
Javier
• 0
0
votes
1
reply
1.4k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler
BiocManager
updated 11 months ago by
shepherl
3.5k • written 11 months ago by
xqhuqd
• 0
4
votes
13
replies
2.6k
views
BiocParallel error with ChIPQC
BiocManager
ChIPQC
RSamtools
BiocParallel
updated 8 months ago by
Rory Stark
★ 5.0k • written 15 months ago by
etiennedanis
• 0
0
votes
1
reply
404
views
Regarding Installation of GEOquery
BiocManager
installation
GEOquery
updated 14 months ago by
Basti
▴ 720 • written 14 months ago by
surinder.chd90
• 0
2
votes
1
reply
3.2k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 15 months ago by
Marcel Ramos
680 • written 15 months ago by
Yong
▴ 10
1
vote
5
replies
1.0k
views
EBImage installation problem
BiocManager
updated 16 months ago by
Vincent J. Carey, Jr.
6.7k • written 16 months ago by
fabianalanadearaujo
• 0
0
votes
3
replies
2.9k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager
R
gofortran
Bioconductor
17 months ago
Olivia
• 0
1
vote
6
replies
1.3k
views
Problems installing BiocManager
BiocManager
17 months ago
ksci
▴ 20
0
votes
2
replies
1.7k
views
RNA-seq: problems with edgeR installation
BiocManager
edgeR
updated 18 months ago by
ATpoint
★ 3.4k • written 18 months ago by
alam
• 0
0
votes
2
replies
931
views
A mistake came when I install some packages using "biocmanager"
biocmanager
20 months ago
f1014063507
• 0
0
votes
2
replies
6.0k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
2.2 years ago
charlotte
▴ 10
12
votes
33
replies
22k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 17 months ago by
James W. MacDonald
63k • written 2.4 years ago by
mizzle
▴ 60
1
vote
2
replies
929
views
unable to install "org.Hs.eg.db"
Rterm.exe
BiocManager
org.Hs.eg.db
updated 2.3 years ago by
James W. MacDonald
63k • written 2.3 years ago by
chet.seligman
• 0
0
votes
1
reply
957
views
Cannot install anything through BiocManager::install()
BiocManager
updated 2.4 years ago by
Kevin Blighe
3.8k • written 2.4 years ago by
Sasha
• 0
6
votes
6
replies
6.3k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.1 years ago by
Mengfei
• 0 • written 2.4 years ago by
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
696
views
I cannot install the splatter on colab
splatter
biocmanager
written 2.5 years ago by
Tianyu
• 0
0
votes
1
reply
1.7k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager
Install
updated 2.7 years ago by
James W. MacDonald
63k • written 2.7 years ago by
saadmurtazakhan
▴ 10
1
vote
3
replies
924
views
Error by installing BiocManager
BiocInstaller
BiocManager
Bioconductor
2.7 years ago
adklts
• 0
1
vote
21
replies
4.3k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 3.4 years ago by
Lucy
▴ 60
5
votes
6
replies
2.1k
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 2.9 years ago by
Martin Morgan
25k • written 2.9 years ago by
Michael Steinbaugh
▴ 90
1
vote
6
replies
2.5k
views
installing bioconductor packages with DNS problem
bioconductor
biocmanager
installing packages
dns
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
PabloR
▴ 10
2
votes
3
replies
1.5k
views
Unable to install BiocManager
BiocManager
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
anamarija
▴ 10
0
votes
1
reply
1.3k
views
ensembldb package installation issue
ensembldb
package
installation
BiocManager
updated 3.2 years ago by
Kevin Blighe
3.8k • written 3.2 years ago by
dylangagler
• 0
1
vote
3
replies
3.6k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
chen
• 0
1
vote
5
replies
2.5k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 3.4 years ago by
Kevin Blighe
3.8k • written 3.4 years ago by
bs14ab
• 0
3
votes
4
replies
1.2k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
3.5 years ago
dakarai_esgdaille
▴ 10
0
votes
1
reply
1.2k
views
I have installed "muscle", but package will not work
muscle
BiocManager
updated 3.6 years ago by
shepherl
3.5k • written 3.6 years ago by
coberkfell20
• 0
0
votes
3
replies
753
views
Installation path not writable
ebimage
biocmanager
updated 3.6 years ago by
James W. MacDonald
63k • written 3.6 years ago by
jenigabi230399
• 0
0
votes
5
replies
1.3k
views
Not latest package version through 'BiocManager::install()'
debug
BiocManager
R pacakge
R
mass spectrometry
3.9 years ago
wang.lingjue
• 0
1
vote
3
replies
919
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade
BiocManager
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
2.1k
views
BiocManager upgrade problem
BiocManager
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
ali.siavosh
• 0
0
votes
7
replies
2.9k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors
GenomicRanges
BiocManager
4.0 years ago
james.dalgleish
▴ 30
0
votes
1
reply
686
views
BiocManager::install() update change from biocLite()
BiocManager
4.0 years ago
howarth.mailing.lists
▴ 10
0
votes
13
replies
2.2k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager
Mac
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
raf4
▴ 20
4
votes
9
replies
2.1k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
lejeczek
▴ 10
0
votes
4
replies
1.1k
views
Error message: "Request to BioMart web service failed."
BiocManager
biomaRt
listMarts()
ensembl
Biomart
updated 4.3 years ago by
Mike Smith
★ 6.1k • written 4.3 years ago by
ktd2918
• 0
0
votes
1
reply
2.2k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect
msa
bios2mds
BiocManager
Bioconductor
4.3 years ago
morlenrp
• 0
6
votes
9
replies
1.9k
views
Install Bioconductor 3.7
docker
BiocManager
BiocVersion
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
Michael Steinbaugh
▴ 90
9
votes
32
replies
4.8k
views
Rsamtools v 1.99.6 installation error
Rsamtools
BiocManager
R 3.6
ubuntu
updated 4.4 years ago by
Hervé Pagès
16k • written 4.4 years ago by
kubovcij
• 0
0
votes
2
replies
2.2k
views
Problem installing scater
scater
R
biocmanager
bioconductor
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
hfberg
• 0
3
votes
4
replies
1.7k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 4.8 years ago by
shepherl
3.5k • written 4.8 years ago by
mariatuffy
• 0
0
votes
3
replies
3.9k
views
Rhdf5lib install problems
R
bioconductor
rhdf5
biocmanager
3.5
4.9 years ago
cem45
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: DiffBind handling of replicates and consensus
by
Rory Stark
★ 5.0k
You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…
Comment: DiffBind: dba.plotProfile(profiles)
by
Rory Stark
★ 5.0k
Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…
Comment: DiffBind: dba.plotProfile(profiles)
by
Dorien
▴ 10
Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …
Comment: Suggested package missing from Development version of Bioconductor
by
shepherl
3.5k
Is your package in review or already in Bioconductor? Its harder if it is in review because we can't tell that the package has or can build…
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
by
andrew.b.kleist
• 0
This worked perfectly! I was able to retrieve the sequences of interest using ```host="https://grch37.ensembl.org"``` within the useEnsembl…
Votes
Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC
Comment: DiffBind: dba.plotProfile(profiles)
Normalisation of data using DESeq2 with multi-groups
Answer: Normalisation of data using DESeq2 with multi-groups
Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
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