Showing : biocmanager • reset
1
vote
5
replies
122
views
EBImage installation problem
BiocManager
updated 10 days ago by 6.6k • written 11 days ago by • 0
0
votes
3
replies
194
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
18 days ago • updated 17 days ago Olivia • 0
1
vote
6
replies
263
views
Problems installing BiocManager
BiocManager
6 weeks ago ksci ▴ 10
0
votes
2
replies
311
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 6 weeks ago by ★ 1.2k • written 6 weeks ago by • 0
0
votes
2
replies
248
views
A mistake came when I install some packages using "biocmanager"
biocmanager
3 months ago f1014063507 • 0
0
votes
2
replies
1.6k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
9 months ago charlotte ▴ 10
11
votes
33
replies
7.8k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 4 weeks ago by 59k • written 12 months ago by ▴ 50
1
vote
2
replies
360
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 11 months ago by 59k • written 11 months ago by • 0
0
votes
1
reply
379
views
Cannot install anything through BiocManager::install()
BiocManager
updated 12 months ago by 3.5k • written 12 months ago by • 0
6
votes
6
replies
4.2k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 9 months ago by • 0 • written 12 months ago by 6.6k
0
votes
2
replies
328
views
I cannot install the splatter on colab
splatter biocmanager
written 14 months ago by • 0
0
votes
1
reply
770
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 15 months ago by 59k • written 15 months ago by ▴ 10
1
vote
3
replies
426
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
16 months ago adklts • 0
1
vote
21
replies
2.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 2.0 years ago by ▴ 50
5
votes
6
replies
1.2k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 18 months ago by 25k • written 19 months ago by ▴ 70
1
vote
6
replies
1.3k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 21 months ago by 25k • written 21 months ago by ▴ 10
2
votes
3
replies
526
views
Unable to install BiocManager
BiocManager
updated 21 months ago by 25k • written 21 months ago by ▴ 10
0
votes
1
reply
606
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 22 months ago by 3.5k • written 22 months ago by • 0
1
vote
3
replies
1.4k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 23 months ago by 25k • written 23 months ago by • 0
1
vote
5
replies
865
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 2.0 years ago by 3.5k • written 2.0 years ago by • 0
3
votes
4
replies
546
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
2.1 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
469
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 2.2 years ago by 3.1k • written 2.2 years ago by • 0
0
votes
3
replies
324
views
Installation path not writable
ebimage biocmanager
updated 2.3 years ago by 59k • written 2.3 years ago by • 0
0
votes
5
replies
701
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
2.5 years ago wang.lingjue • 0
1
vote
3
replies
396
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 2.6 years ago by 25k • written 2.6 years ago by ★ 2.4k
0
votes
1
reply
1.6k
views
BiocManager upgrade problem
BiocManager
updated 2.6 years ago by 25k • written 2.6 years ago by • 0
0
votes
7
replies
2.1k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
2.6 years ago james.dalgleish ▴ 30
0
votes
1
reply
376
views
BiocManager::install() update change from biocLite()
BiocManager
2.6 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
1.5k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 2.9 years ago by 25k • written 2.9 years ago by ▴ 20
4
votes
9
replies
1.5k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 2.9 years ago by 25k • written 2.9 years ago by ▴ 10
0
votes
4
replies
739
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 2.9 years ago by ★ 5.5k • written 2.9 years ago by • 0
0
votes
1
reply
1.4k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
2.9 years ago morlenrp • 0
6
votes
9
replies
1.2k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 3.1 years ago by 25k • written 3.1 years ago by ▴ 70
9
votes
32
replies
2.9k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 3.1 years ago by 15k • written 3.1 years ago by • 0
0
votes
2
replies
1.2k
views
Problem installing scater
scater R biocmanager bioconductor
updated 3.5 years ago by ★ 27k • written 3.5 years ago by • 0
3
votes
4
replies
1.1k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 3.5 years ago by 3.1k • written 3.5 years ago by • 0
0
votes
3
replies
2.7k
views
Rhdf5lib install problems
R bioconductor rhdf5 biocmanager 3.5
3.5 years ago cem45 • 0
1
vote
6
replies
8.5k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error bioconductor biocmanager
updated 3.5 years ago by 3.1k • written 3.6 years ago by ▴ 10
1
vote
6
replies
1.7k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 130
1
vote
2
replies
1.2k
views
I can't install the pasilla package
pasilla biocmanager
updated 3.5 years ago by 59k • written 3.5 years ago by ▴ 20
1
vote
1
reply
592
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 3.6 years ago by 3.1k • written 3.6 years ago by ▴ 70
0
votes
4
replies
1.0k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
3.7 years ago Kyle Johnsen ▴ 20
42 results • Page 1 of 1
Recent ...
Replies
Comment: performing the differential binding in ChIP-seq by ATpoint ★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA by Akira • 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
Awards • All
Scholar to Gordon Smyth 45k
Popular Question to andrebolerbarros ▴ 10
Scholar to James W. MacDonald 59k
Scholar to Guido Hooiveld ★ 3.2k
Scholar to Kevin Blighe 3.5k
Locations • All
V&A Waterfront, Cape Town, South Africa, 3 minutes ago
India, 4 minutes ago
Melbourne, Australia, 21 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Germany, 1 hour ago
Traffic: 1079 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6