Showing : biocmanager • reset
0
votes
2
replies
168
views
Bioconductor version cannot be validated
BiocManager Bioconductor
6 weeks ago charlotte ▴ 10
10
votes
14
replies
3.0k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 3 months ago by 58k • written 4 months ago by ▴ 50
1
vote
2
replies
224
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 3 months ago by 58k • written 3 months ago by • 0
0
votes
1
reply
186
views
Cannot install anything through BiocManager::install()
BiocManager
updated 4 months ago by 3.4k • written 4 months ago by • 0
6
votes
6
replies
1.7k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 5 weeks ago by • 0 • written 4 months ago by 6.5k
0
votes
2
replies
186
views
I cannot install the splatter on colab
splatter biocmanager
written 6 months ago by • 0
0
votes
1
reply
345
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 7 months ago by 58k • written 7 months ago by ▴ 10
1
vote
3
replies
267
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
8 months ago adklts • 0
1
vote
21
replies
1.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 16 months ago by ▴ 30
4
votes
6
replies
834
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 10 months ago by 25k • written 10 months ago by ▴ 70
1
vote
6
replies
813
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 13 months ago by 25k • written 13 months ago by ▴ 10
2
votes
3
replies
338
views
Unable to install BiocManager
BiocManager
updated 13 months ago by 25k • written 13 months ago by ▴ 10
0
votes
1
reply
318
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 13 months ago by 3.4k • written 13 months ago by • 0
1
vote
3
replies
611
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 15 months ago by 25k • written 15 months ago by • 0
1
vote
5
replies
334
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 16 months ago by 3.4k • written 16 months ago by • 0
3
votes
4
replies
315
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
17 months ago dakarai_esgdaille ▴ 10
0
votes
1
reply
218
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 18 months ago by 2.8k • written 18 months ago by • 0
0
votes
3
replies
171
views
Installation path not writable
ebimage biocmanager
updated 19 months ago by 58k • written 19 months ago by • 0
0
votes
5
replies
334
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
22 months ago wang.lingjue • 0
1
vote
3
replies
273
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 22 months ago by 25k • written 22 months ago by ★ 2.4k
0
votes
1
reply
1.3k
views
BiocManager upgrade problem
BiocManager
updated 23 months ago by 25k • written 23 months ago by • 0
0
votes
7
replies
1.5k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
23 months ago james.dalgleish ▴ 30
0
votes
1
reply
277
views
BiocManager::install() update change from biocLite()
BiocManager
23 months ago howarth.mailing.lists ▴ 10
0
votes
13
replies
1.1k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 2.2 years ago by 25k • written 2.2 years ago by ▴ 20
4
votes
9
replies
1.3k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 2.2 years ago by 25k • written 2.2 years ago by ▴ 10
0
votes
4
replies
579
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 2.2 years ago by ★ 5.1k • written 2.2 years ago by • 0
0
votes
1
reply
984
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
2.3 years ago morlenrp • 0
6
votes
9
replies
876
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 2.4 years ago by 25k • written 2.4 years ago by ▴ 70
9
votes
32
replies
2.3k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 2.4 years ago by 15k • written 2.4 years ago by • 0
0
votes
2
replies
966
views
Problem installing scater
scater R biocmanager bioconductor
updated 2.8 years ago by ★ 27k • written 2.8 years ago by • 0
3
votes
4
replies
838
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 2.8 years ago by 2.8k • written 2.8 years ago by • 0
0
votes
3
replies
2.1k
views
Rhdf5lib install problems
R bioconductor rhdf5 biocmanager 3.5
2.8 years ago cem45 • 0
1
vote
6
replies
7.6k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error bioconductor biocmanager
updated 2.8 years ago by 2.8k • written 2.9 years ago by ▴ 10
1
vote
6
replies
1.5k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 2.9 years ago by 25k • written 2.9 years ago by ▴ 130
1
vote
2
replies
1.0k
views
I can't install the pasilla package
pasilla biocmanager
updated 2.9 years ago by 58k • written 2.9 years ago by ▴ 10
1
vote
1
reply
479
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 2.9 years ago by 2.8k • written 2.9 years ago by ▴ 70
0
votes
4
replies
898
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
3.0 years ago Kyle Johnsen ▴ 20
37 results • Page 1 of 1
Recent ...
Replies
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Awards • All
Teacher to Vincent J. Carey, Jr. 6.5k
Scholar to Rory Stark ★ 4.1k
Scholar to jbnrodriguez • 0
Scholar to Yang Liao ▴ 260
Scholar to James W. MacDonald 58k
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