Timeout was reached error in GEOquery package
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@mortezahadizade-16792
Last seen 19 months ago
Iran

Hi every one

During microarray analysis, I encounter below error, rafter loading GEOquery package.

 

gset <- getGEO(dataset, GSEMatrix =TRUE, AnnotGPL=TRUE, destdir = "C:/R Database/TGFb /Data/")

Timeout was reached error: Connection timed out after 10000 milliseconds

 

How to resolve this error?

I would be very pleased if you could guide me.

R microarray software error • 3.7k views
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Kevin Blighe ★ 4.0k
@kevin
Last seen 24 days ago
The Cave, 181 Longwood Avenue, Boston, …

Cross-posted: https://www.biostars.org/p/329485/

Note that the first argument should be:

GEO, A character string representing a GEO object for download and parsing. (eg., 'GDS505','GSE2','GSM2','GPL96')

Where you have `dataset`, you should have a character ID representing the ID of the GEO study that you want to obtain.

 

Kevin

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