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Question: Timeout was reached error in GEOquery package
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gravatar for morteza.hadizade
3 months ago by
morteza.hadizade10 wrote:

Hi every one

During microarray analysis, I encounter below error, rafter loading GEOquery package.

 

gset <- getGEO(dataset, GSEMatrix =TRUE, AnnotGPL=TRUE, destdir = "C:/R Database/TGFb /Data/")

Timeout was reached error: Connection timed out after 10000 milliseconds

 

How to resolve this error?

I would be very pleased if you could guide me.

microarray software error R • 123 views
ADD COMMENTlink modified 3 months ago by Kevin Blighe30 • written 3 months ago by morteza.hadizade10
Answer: Timeout was reached error in GEOquery package
0
gravatar for Kevin Blighe
3 months ago by
Kevin Blighe30
Republic of Ireland
Kevin Blighe30 wrote:

Cross-posted: https://www.biostars.org/p/329485/

Note that the first argument should be:

GEO, A character string representing a GEO object for download and parsing. (eg., 'GDS505','GSE2','GSM2','GPL96')

Where you have `dataset`, you should have a character ID representing the ID of the GEO study that you want to obtain.

 

Kevin

ADD COMMENTlink written 3 months ago by Kevin Blighe30
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