Question: Timeout was reached error in GEOquery package
0
gravatar for morteza.hadizade
11 months ago by
morteza.hadizade10 wrote:

Hi every one

During microarray analysis, I encounter below error, rafter loading GEOquery package.

 

gset <- getGEO(dataset, GSEMatrix =TRUE, AnnotGPL=TRUE, destdir = "C:/R Database/TGFb /Data/")

Timeout was reached error: Connection timed out after 10000 milliseconds

 

How to resolve this error?

I would be very pleased if you could guide me.

microarray software error R • 297 views
ADD COMMENTlink modified 11 months ago by Kevin Blighe200 • written 11 months ago by morteza.hadizade10
Answer: Timeout was reached error in GEOquery package
0
gravatar for Kevin Blighe
11 months ago by
Kevin Blighe200
Kevin Blighe200 wrote:

Cross-posted: https://www.biostars.org/p/329485/

Note that the first argument should be:

GEO, A character string representing a GEO object for download and parsing. (eg., 'GDS505','GSE2','GSM2','GPL96')

Where you have `dataset`, you should have a character ID representing the ID of the GEO study that you want to obtain.

 

Kevin

ADD COMMENTlink written 11 months ago by Kevin Blighe200
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 412 users visited in the last hour