Question: diffBind report Fold scale
0
gravatar for joseluis.ruiz
10 months ago by
joseluis.ruiz0 wrote:

Hi, so I have obtained using the package diffBind a set of regions with significant differential signal between 2 conditions. In the diffbind report, there is a column called "Fold". I guess this is like log2FoldChange in DESeq2, but I think I'm failing in the interpretation. Can anyone confirm if this column is already in log2 scale? I have looked everywhere and I'm still not sure on the scale of this column.

Thank for your help!

diffbind fold change • 253 views
ADD COMMENTlink modified 10 months ago by Rory Stark3.0k • written 10 months ago by joseluis.ruiz0
Answer: diffBind report Fold scale
1
gravatar for Rory Stark
10 months ago by
Rory Stark3.0k
CRUK, Cambridge, UK
Rory Stark3.0k wrote:

The man page for dba.report() states they are in log form, I can confirm these are specifically log2(). The normalized read concentration values are also log2().

ADD COMMENTlink written 10 months ago by Rory Stark3.0k
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