Question

Meta-analysis of RNAseq data

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Vladimir Krasikov ▴ 90

@vladimir-krasikov-5097

Last seen 5.1 years ago

Dear Bioconductor experts! I wonder if there any straightforward pipeline for meta-analysis of RNAseq experiments. Any ideas pointing towards suitable packages, websites, papers are appreciated. Is there a way to compare microarray data and RNAseq data.

I just want to initiate discussion and further go with the description of the task I have

Regards

RNAseq meta-analysis microarray public data sets • 1.0k views

ADD COMMENT • link updated 5.8 years ago by alexvpickering ▴ 110 • written 5.8 years ago by Vladimir Krasikov ▴ 90

score 1 · Answer 1 · 2019-02-07

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alexvpickering ▴ 110

@alexvpickering

Last seen 2.6 years ago

Canada

RNA Meta Analysis allows you to run meta-analyses that include both RNAseq and microarray studies. It currently includes ~8,000 RNAseq studies and 27,584 microarray studies. You can't currently add your own data.

ADD COMMENT • link 5.8 years ago alexvpickering ▴ 110

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Thanks for the suggestion. Will take a look

ADD REPLY • link 5.8 years ago Vladimir Krasikov ▴ 90