Showing : meta-analysis • reset
0
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796
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What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 2.3 years ago by 41k • written 2.3 years ago by • 0
0
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11
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3.5k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 2.3 years ago by • 0 • written 5.1 years ago by ▴ 10
0
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7
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1.3k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
2.8 years ago michael.s • 0
3
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1
reply
440
views
Meta-Analysis: Start with counts?
meta-analysis
updated 4.6 years ago by ★ 28k • written 4.6 years ago by • 0
1
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2
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724
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Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 4.8 years ago by ▴ 110 • written 4.8 years ago by ▴ 90
0
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3
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1.7k
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Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 4.9 years ago by 0 • written 7.4 years ago by ▴ 70
2
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1
reply
658
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 6.4 years ago by 41k • written 6.4 years ago by • 0
0
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0
replies
782
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Meta-Analysis chip-seq data
chip-seq meta-analysis
6.5 years ago rezapanahi222 • 0
0
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0
replies
722
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tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
6.5 years ago rezapanahi222 • 0
2
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4
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1.4k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
6.5 years ago rezapanahi222 • 0
6
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4
replies
2.7k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 6.6 years ago by ▴ 110 • written 6.7 years ago by ▴ 40
3
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6
replies
1.2k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 820
0
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1
reply
957
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meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
6.9 years ago hassangiahi • 0
0
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1
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873
views
Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 7.2 years ago by 41k • written 7.2 years ago by ▴ 10
2
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5
replies
2.4k
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Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 7.4 years ago by ▴ 110 • written 7.9 years ago by ▴ 80
3
votes
6
replies
1.8k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
7.7 years ago Konstantinos Yeles ▴ 80
0
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0
replies
1.6k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
7.8 years ago alexvpickering ▴ 110
4
votes
4
replies
1.2k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 7.9 years ago by 49k • written 7.9 years ago by ▴ 10
4
votes
1
reply
2.3k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 8.0 years ago by ▴ 150 • written 8.4 years ago by ▴ 260
2
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4
replies
2.6k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 8.4 years ago by ★ 28k • written 8.4 years ago by ▴ 20
20 results • Page 1 of 1
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Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE) by James W. MacDonald 64k
There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B by Mike Smith ★ 6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
Votes
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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