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meta-analysis
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0
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3
replies
1.6k
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Meta-analysis on RNA-seq data sets
meta-analysis
sva
Combat_Seq
RNAseq
17 months ago
Travis
• 0
0
votes
1
reply
1.6k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 4.5 years ago by
Michael Love
43k • written 4.5 years ago by
nash12
• 0
0
votes
11
replies
5.1k
views
Remove NaN from a list or replace NaN with a value.
R
meta-analysis
updated 4.5 years ago by
Tanya
• 0 • written 7.3 years ago by
morteza.hadizade
• 0
0
votes
7
replies
2.2k
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
5.0 years ago
michael.s
• 0
3
votes
1
reply
836
views
Meta-Analysis: Start with counts?
meta-analysis
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
kerr
• 0
1
vote
2
replies
1.4k
views
Meta-analysis of RNAseq data
RNAseq
meta-analysis
microarray
public data sets
updated 7.1 years ago by
alexvpickering
▴ 110 • written 7.1 years ago by
Vladimir Krasikov
▴ 90
0
votes
3
replies
2.4k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray
meta-analysis
gene expression
updated 7.1 years ago by
Bioconductor Community
0 • written 9.6 years ago by
StephK
▴ 70
2
votes
1
reply
992
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2
meta-analysis
metaseq
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
ed_isfahani
• 0
0
votes
0
replies
1.2k
views
Meta-Analysis chip-seq data
chip-seq
meta-analysis
8.7 years ago
rezapanahi222
• 0
0
votes
0
replies
1.1k
views
tools or package for meta-analysis of chip-seq result
chipseq
meta-analysis
8.8 years ago
rezapanahi222
• 0
2
votes
4
replies
2.2k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq
meta-analysis
ubuntu
8.8 years ago
rezapanahi222
• 0
6
votes
4
replies
4.1k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 8.8 years ago by
alexvpickering
▴ 110 • written 8.9 years ago by
giroudpaul
▴ 40
3
votes
6
replies
1.9k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray
rnaseq
DEgenes
meta-analysis
limma
updated 9.0 years ago by
Aaron Lun
★ 29k • written 9.0 years ago by
svlachavas
▴ 840
0
votes
1
reply
1.5k
views
meta analysis of p value data by metaseq package
rnaseq
meta-analysis
p values
9.1 years ago
hassangiahi
• 0
0
votes
1
reply
1.3k
views
Meta-analysis on rna-seq data without replicates
meta-analysis
rnaseq
metarnaseq
updated 9.4 years ago by
Michael Love
43k • written 9.4 years ago by
bioinformatics
▴ 30
2
votes
5
replies
3.4k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray
meta-analysis
cross-platform normalization
statistical inference
updated 9.7 years ago by
alexvpickering
▴ 110 • written 10.1 years ago by
Konstantinos Yeles
▴ 90
3
votes
6
replies
3.1k
views
Comparison of DE lists from different datasets of same microarray platform
microarray
DE-comparison
meta-analysis
scatter-plot
limma
10.0 years ago
Konstantinos Yeles
▴ 90
0
votes
2
replies
2.5k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
updated 29 days ago by
varying.mastodon.isyn
• 0 • written 10.0 years ago by
alexvpickering
▴ 110
4
votes
4
replies
1.9k
views
Comparing DE probes from same-platform microarrays
limma
microarray
meta-analysis
updated 10.1 years ago by
Gordon Smyth
53k • written 10.1 years ago by
clevy
▴ 10
4
votes
1
reply
2.8k
views
Meta-analysis of gene expression data by 'MetaDE'
r
meta-analysis
MetaDE
updated 10.2 years ago by
Cherif Ben Hamda
▴ 150 • written 10.6 years ago by
Agaz Hussain Wani
▴ 260
2
votes
4
replies
3.6k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis
limma
toptable
updated 10.6 years ago by
Aaron Lun
★ 29k • written 10.6 years ago by
Vani
▴ 20
21 results • Page
1 of 1
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Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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