How to install DEXSeq on R 3.4.4
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@justinkablan225-18560
Last seen 2.2 years ago
Hello, I want to install DEXSeq on linux mint 18.3

> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 18.3
DEXSEq Linux • 444 views
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Alejandro Reyes ★ 1.8k
@alejandro-reyes-5124
Last seen 9 weeks ago
Novartis Institutes for BioMedical Reseā€¦

Hi @justinkablan225,

Please follow the instructions from this link: http://bioconductor.org/install/

The first sentence says "The current release of Bioconductor is version 3.8; it works with R version 3.5.3.". As James mentioned, old versions of R and Bioconductor are not supported. This means that you have to update your R to the current release.

Alejandro

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Work nicely now
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@james-w-macdonald-5106
Last seen 5 hours ago
United States

You can install outdated things on outdated R versions using biocLite:

source("https://bioconductor.org/biocLite.R")
biocLite("DEXseq")

But do note that we don't provide support for outdated versions of packages, so you are on your own if things don't work as expected. All things equal you should just use the current versions of R/BioC.

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Thinks,
I tried this but don't work
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What exactly does 'I tried this' mean?

> biocLite("DEXSeq")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.2 (2017-09-28).
Installing package(s)  DEXSeq 
trying URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/DEXSeq_1.24.4.tar.gz'
Content type 'application/x-gzip' length 550358 bytes (537 KB)
==================================================
downloaded 537 KB

* installing *source* package  DEXSeq  ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DEXSeq)

> sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 8 (jessie)

Matrix products: default
BLAS: /data/oldR/R-3.4.2/lib64/R/lib/libRblas.so
LAPACK: /data/oldR/R-3.4.2/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
[1] compiler_3.4.2 tools_3.4.2   
> 

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You have to provide more information than that, for instance copy and paste the output fo the command that you tried.

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