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Linux
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0
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2
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908
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tximport ERROR : all(file.exists(files)) is not TRUE
Linux
R
tximport
11 months ago
nakane_clan
• 0
0
votes
4
replies
3.1k
views
Problems Installing biomaRt
biomart
linux
updated 2.1 years ago by
Martin Morgan
25k • written 4.8 years ago by
christopher.mcfall
• 0
1
vote
6
replies
856
views
How to install DEXSeq on R 3.4.4
DEXSEq
Linux
updated 3.8 years ago by
Alejandro Reyes
★ 1.8k • written 3.8 years ago by
justinkablan225
• 0
0
votes
1
reply
631
views
ChemmineOB Installation RHEL
ChemmineOB
Linux
Installation
3.9 years ago
jandrosavich
• 0
0
votes
2
replies
3.4k
views
[Resolved] RcppArmadillo pckg ERRORS : non-zero exit status (and so DESeq2 also)
DESEq2
R
linux
RcppArmadillo
4.0 years ago
RS1
• 0
0
votes
0
replies
652
views
Job:
Bioinformatician ('CHBIO15) (m/f)
bioinformatician job
Linux
NGS
Job
4.2 years ago
l.brown
▴ 10
0
votes
0
replies
746
views
Job:
Bioinformatics Engineer / Data Analyst
python
bio
ngs
linux
Job
4.9 years ago
EMBL Recruitment
• 0
1
vote
0
replies
911
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
5.1 years ago
s.munster
▴ 40
0
votes
1
reply
934
views
rhdf5 h5ls output differs from Linux to Windows
R
h5ls
windows
linux
updated 5.2 years ago by
Mike Smith
★ 5.9k • written 5.3 years ago by
maxime.fortin
• 0
1
vote
4
replies
1.2k
views
Rsubread install problems on CentOS 6.8/R3.4.1/gcc/4.8.2
linux
rsubread
installation
updated 5.6 years ago by
Mike Smith
★ 5.9k • written 5.6 years ago by
hjmangalam
• 0
0
votes
6
replies
1.8k
views
Chipseeker is unavabile on Linux CentOS7 ?
Bioconduct or
Chipseeker
CentOS7
Linux
installation
updated 6.3 years ago by
Guangchuang Yu
★ 1.2k • written 6.3 years ago by
spsp9987
• 0
0
votes
4
replies
2.2k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 6.5 years ago by
mfox
• 0 • written 6.5 years ago by
anjali.krishna1008
• 0
0
votes
1
reply
968
views
R slow, using all physical memory and 20GB Virt
linux
r
phylogenetic
computational biology
updated 7.6 years ago by
Hervé Pagès
16k • written 7.6 years ago by
guilherme
• 0
3
votes
1
reply
894
views
best server maintenance practices
linux
R
server
updated 8.3 years ago by
James W. MacDonald
62k • written 8.3 years ago by
Matthew McCormack
▴ 180
14 results • Page
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Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★ 2.1k
You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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Guido Hooiveld
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Michael Love
39k
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