Hello, I want to install DEXSeq on linux mint 18.3
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 18.3
Hi @justinkablan225,
Please follow the instructions from this link: http://bioconductor.org/install/
The first sentence says "The current release of Bioconductor is version 3.8; it works with R version 3.5.3.". As James mentioned, old versions of R and Bioconductor are not supported. This means that you have to update your R to the current release.
Alejandro
You can install outdated things on outdated R versions using biocLite:
source("https://bioconductor.org/biocLite.R")
biocLite("DEXseq")
But do note that we don't provide support for outdated versions of packages, so you are on your own if things don't work as expected. All things equal you should just use the current versions of R/BioC.
What exactly does 'I tried this' mean?
> biocLite("DEXSeq")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.2 (2017-09-28).
Installing package(s) DEXSeq
trying URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/DEXSeq_1.24.4.tar.gz'
Content type 'application/x-gzip' length 550358 bytes (537 KB)
==================================================
downloaded 537 KB
* installing *source* package DEXSeq ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DEXSeq)
> sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 8 (jessie)
Matrix products: default
BLAS: /data/oldR/R-3.4.2/lib64/R/lib/libRblas.so
LAPACK: /data/oldR/R-3.4.2/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.28.0
loaded via a namespace (and not attached):
[1] compiler_3.4.2 tools_3.4.2
>
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