I am getting following error related to read.metharray, while running my Script,
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : !anyDuplicated(basenames) is not TRUE
FYI, I made my sample sheet on my own by removing the information of some of the samples for which the data was missing. I have double checked that now my meth_idat folder has exactly the same number of samples each with 2 idat files as mentioned in my sample sheet. But still getting this error.
Any help will be highly appreciated.