Bioconductor Idat

Showing : idat • reset

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1.2k

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idat illumina limma read.idat

updated 2.4 years ago by Gordon Smyth 47k • written 2.5 years ago by bastien_chassagnol • 0

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2.6k

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minfi methylation idat samplesheet

updated 2.1 years ago by sci_djw • 0 • written 4.1 years ago by researcher • 0

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4.2k

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minfi read.metharray.exp idat HM450k

5.6 years ago poojitha.stemcell ▴ 10

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1.5k

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gwastools idat gds format

updated 5.9 years ago by Stephanie M. Gogarten ▴ 840 • written 5.9 years ago by catbriggsm • 0

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1.5k

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limma illuminaio idat gzip

updated 6.0 years ago by Matthew Ritchie ▴ 1000 • written 6.0 years ago by Guido Hooiveld ★ 3.6k

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1.5k

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methylation illumina EPIC methylationepic idat

updated 6.1 years ago by Guido Hooiveld ★ 3.6k • written 6.1 years ago by Ellen O • 0

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1.5k

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minfi idat annotation EPIC

updated 6.2 years ago by xue.zhang • 0 • written 6.3 years ago by Frocha ▴ 10

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8.6k

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microarray illumina idat

updated 7.3 years ago by Gordon Smyth 47k • written 7.3 years ago by kritikamish99 ▴ 10

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1.9k

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lumidat idat microarray illumina

updated 7.7 years ago by Mark Cowley ▴ 400 • written 7.7 years ago by willj ▴ 30

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1.7k

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illuminaio idat beadarray

updated 7.7 years ago by Mike Smith ★ 6.0k • written 7.7 years ago by willj ▴ 30

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1.7k

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crlmm idat

updated 8.0 years ago by Matthew Ritchie ▴ 1000 • written 8.0 years ago by Shi, Tao ▴ 720

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1.7k

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illuminaio idat

8.3 years ago • updated 8.2 years ago lacion • 0

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4.9k

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beadarray lumi illuminaio idat

updated 18 months ago by Gordon Smyth 47k • written 9.5 years ago by Sean Davis 21k

13 results • Page 1 of 1

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Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Comment: Interpret plot from DiffBind by Chris • 0

Thank you for the explanation! The purple (**gain**) in the control in the right bottom corner but on the y axis is labeled **loss** which …

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

Awards • All

Scholar to Mike Smith ★ 6.0k