News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
gravatar for Johannes Rainer
3 months ago by
Johannes Rainer1.5k
Johannes Rainer1.5k wrote:

Dear all,

We've just added ensembldb EnsDb databases containing annotation from Ensembl for all 169 species in Ensembl release 97 to AnnotationHub:

> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2019-05-02
> query(ah, c("EnsDb", "v97"))
AnnotationHub with 169 records
# snapshotDate(): 2019-05-02 
# $dataprovider: Ensembl
# $species: Acanthochromis polyacanthus, Ailuropoda melanoleuca, Amphilophus...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype 
# retrieve records with, e.g., 'object[["AH73817"]]' 

  AH73817 | Ensembl 97 EnsDb for Anser brachyrhynchus    
  AH73818 | Ensembl 97 EnsDb for Astatotilapia calliptera
  ...       ...                                          
  AH73984 | Ensembl 97 EnsDb for Xenopus tropicalis      
  AH73985 | Ensembl 97 EnsDb for Zonotrichia albicollis  

ADD COMMENTlink written 3 months ago by Johannes Rainer1.5k
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