So, I'm attempting to update my CRAN package and it depends on several other packages. What I notice is that many packages fail with errors on OSX checks due to Bioconductor packages not being visible when CRAN checks are run. I guess I'm posting first to Bioconductor because I know that the community probably knows the ins and outs of package development when working with Bioconductor packages better than the r package developer list. I haven't yet checked there, but I'm wondering if the community has any insight in how to solve these issues.
For example: https://www.r-project.org/nosvn/R.check/r-release-osx-x86_64/PlasmaMutationDetector-00check.html Displays the following error. checking package dependencies ... ERROR Packages required but not available: 'GenomicRanges', 'VariantAnnotation', 'S4Vectors', 'Rsamtools', 'rtracklayer', 'SummarizedExperiment'
A similar thing happens for other packages: https://cran.r-project.org/web/checks/checkresultsgkmSVM.html http://cran.cnr.berkeley.edu/web/checks/checkresultsXGR.html http://mirror.math.princeton.edu/pub/CRAN-archive/web/checks/2018-03-05checkresults_QNB.html
I don't know if I am personally responsible to keep these working on OSX, but from trying to update my package, I notice these errors crop up on OSX. Is there something I can do personally to fix this?