csSAMfit with covariates
1
0
Entering edit mode
antgomo • 0
@antgomo-21296
Last seen 5 weeks ago
Spain

Hi,

i am using csSAMfit to deal with specific differential expression in each cell type using a matrix o deconvoluted cellular components.

As I am a little bit newbie using csSAMfit, two questions

  1. Can deal with covariates?

  2. Can I use it if i want to get the response using a continous variable, i.e age instead of typical binary case vs control?

Thanks in advamce

limma microarray deconvolution cell type • 220 views
ADD COMMENT
0
Entering edit mode
@gordon-smyth
Last seen 3 hours ago
WEHI, Melbourne, Australia

If you want to ask a question about csSAM then send it to the csSAM authors:

https://github.com/shenorrLab

csSAM is not a Bioconductor package and I know nothing about it. SAM itself can't handle anything other than a two group comparison, so I would guess that csSAM can't either.

ADD COMMENT
0
Entering edit mode

Sorry it's true, lapsus, please close the thread

Apologies and Kind Regards

ADD REPLY

Login before adding your answer.

Traffic: 441 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6