Showing : deconvolution • reset
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
5 months ago JG13 • 0
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.8 years ago Hasan Alanya • 0
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1.1k
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Best deconvolution method
Deconvolution
3.1 years ago Barista • 0
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1
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804
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
4.5 years ago kavator ▴ 30
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.7 years ago marcin.bazyliszek • 0
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903
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 4.8 years ago by 52k • written 4.8 years ago by • 0
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4
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1.5k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 5.9 years ago by 43k • written 5.9 years ago by ▴ 30
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1.1k
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
6.9 years ago casey.rimland ▴ 170
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1.2k
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
6.9 years ago WouterDeCoster ▴ 130
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2.9k
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 160
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
9.5 years ago carleshf ▴ 10
11 results • Page 1 of 1
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Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library by María Calvo • 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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