I am trying to import a Newick format tree into Cystoscape using vinette in Bioconductor. (https://bioconductor.org/packages/release/bioc/vignettes/RCy3/inst/doc/Phylogenetic-trees.html) This works well until I get to this call in the vinette....
createNetworkFromIgraph(ig, title="phylotree", collection = "phylotree")
I then get the following error.. . RCy3::commandsPOST, HTTP Error Code: 500 url=http://localhost:1234/v1/commands/vizmap/apply body={ "styles": "default" } Error in commandsPOST("vizmap apply styles=\"default\"", base.url = base.url) : No network views selected.
Any help is much appreciated!
This has been fixed in the latest version of the RCy3, 2.10.0.