Showing : Cytoscape • reset
1
vote
1
reply
802
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 2.1 years ago by ▴ 30 • written 2.1 years ago by ▴ 90
3
votes
7
replies
2.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.7 years ago Ortega-C ▴ 10
0
votes
0
replies
1.7k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
3.0 years ago gianni.drm • 0
0
votes
1
reply
1.2k
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 5.1 years ago by ▴ 30 • written 5.6 years ago by • 0
3
votes
4
replies
2.1k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.8 years ago • updated 6.7 years ago Matthew Thornton ▴ 390
1
vote
0
replies
2.6k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
7.3 years ago lm795 ▴ 10
0
votes
0
replies
1.6k
views
Help with generating network from gene expression data
gene expression network cytoscape
8.1 years ago torgeirous • 0
6
votes
8
replies
11k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 8.1 years ago by ▴ 60 • written 8.7 years ago by ▴ 60
0
votes
1
reply
1.8k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 8.4 years ago by ★ 3.0k • written 8.4 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course by a2a2haa • 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
Awards • All
Popular Question to shepherl 4.3k
Popular Question to Andreas Zankl ▴ 80
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to Steve Lianoglou ★ 13k
Teacher to Michael Love 43k
Locations • All
United States, 45 minutes ago
Melbourne, Australia, 57 minutes ago
United States, 1 hour ago
The city by the bay, 2 hours ago
Germany, 3 hours ago
Traffic: 1404 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6