Showing : Cytoscape • reset
1
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348
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 6 months ago by ▴ 20 • written 7 months ago by ▴ 90
3
votes
7
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1.4k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
14 months ago Ortega-C ▴ 10
0
votes
0
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952
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
17 months ago gianni.drm • 0
0
votes
1
reply
809
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.6 years ago by ▴ 20 • written 4.0 years ago by • 0
3
votes
4
replies
1.5k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.2 years ago Matthew Thornton ▴ 370
1
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0
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1.8k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
5.8 years ago lm795 ▴ 10
0
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0
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1.1k
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Help with generating network from gene expression data
gene expression network cytoscape
6.5 years ago torgeirous • 0
6
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8
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8.7k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 6.5 years ago by ▴ 60 • written 7.2 years ago by ▴ 60
0
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1
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1.3k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by • 0
9 results • Page 1 of 1
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Scholar to Michael Love 42k
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Scholar to Gordon Smyth 51k
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