Importing Newick trees in Cytoscape by conversion to igraph via RCy3
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ellisjc • 0
@ellisjc-23884
Last seen 11 months ago

I am trying to import a Newick format tree into Cystoscape using vinette in Bioconductor. (https://bioconductor.org/packages/release/bioc/vignettes/RCy3/inst/doc/Phylogenetic-trees.html) This works well until I get to this call in the vinette....

createNetworkFromIgraph(ig, title="phylotree", collection = "phylotree")

I then get the following error.. . RCy3::commandsPOST, HTTP Error Code: 500 url=http://localhost:1234/v1/commands/vizmap/apply body={ "styles": "default" } Error in commandsPOST("vizmap apply styles=\"default\"", base.url = base.url) : No network views selected.

Any help is much appreciated!

RCy3 Cytoscape R Newick Bioconductor • 170 views
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This has been fixed in the latest version of the RCy3, 2.10.0.

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