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RCy3
•
reset
1
vote
2
replies
940
views
KEGGgraph result difference
igraph
KEGGgraph
RCy3
GraphNEL
17 months ago • updated 16 months ago
Arindam
▴ 80
2
votes
2
replies
1.4k
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
21 months ago
Matthew Thornton
▴ 390
1
vote
1
reply
827
views
Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 2.1 years ago by
alex.pico
▴ 30 • written 2.2 years ago by
David R
▴ 90
1
vote
1
reply
1.8k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network
RCy3
updated 2.1 years ago by
alex.pico
▴ 30 • written 2.2 years ago by
David R
▴ 90
1
vote
1
reply
1.5k
views
Cytohubba in RCY3
RCy3
Cytohubba
updated 2.2 years ago by
alex.pico
▴ 30 • written 2.2 years ago by
jzhan067
▴ 10
3
votes
7
replies
2.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
2.8 years ago
Ortega-C
▴ 10
1
vote
1
reply
1.5k
views
how to call an app from Cytoscape using R?
RCy3
updated 3.1 years ago by
alex.pico
▴ 30 • written 3.1 years ago by
adR
▴ 40
2
votes
3
replies
2.4k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 4.3 years ago by
Steve Lianoglou
★ 13k • written 4.3 years ago by
Caitlin
▴ 50
1
vote
2
replies
1.6k
views
RCy3 Cytoscape package question
rcy3
updated 5.2 years ago by
alex.pico
▴ 30 • written 6.1 years ago by
hanna226613
▴ 10
1
vote
3
replies
2.0k
views
loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape
Pathways
Wikipathways
rWikiPathways
RCy3
5.2 years ago
Emilia
▴ 40
0
votes
1
reply
1.2k
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 5.2 years ago by
alex.pico
▴ 30 • written 5.6 years ago by
ellisjc
• 0
3
votes
4
replies
2.2k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
6.8 years ago
Matthew Thornton
▴ 390
12 results • Page
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Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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