Problem for installing arrayQualityMetrics package?
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Last seen 8 months ago

Hello All, I am trying to install the package arrayQualityMetrics Package, I got the error mentioned below

Error: package or namespace load failed for ‘arrayQualityMetrics’ in rbind(info, getNamespaceInfo(env, "S3methods")):
 number of columns of matrices must match (see arg 2)

please help to solve this issue

R version 3.5.3 (2019-03-11)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)

Matrix products: default

[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] genefilter_1.64.0     splines_3.5.3         lattice_0.20-41       gcrma_2.54.0         
 [5] colorspace_1.4-1      vctrs_0.3.2           stats4_3.5.3          base64enc_0.1-3      
 [9] blob_1.2.1            survival_3.2-3        XML_3.99-0.3          rlang_0.4.7          
[13] pillar_1.4.6          glue_1.4.1            DBI_1.1.0             RColorBrewer_1.1-2   
[17] affy_1.60.0           BiocGenerics_0.28.0   bit64_4.0.2           jpeg_0.1-8.1         
[21] affyio_1.52.0         lifecycle_0.2.0       zlibbioc_1.28.0       Biostrings_2.50.2    
[25] munsell_0.5.0         gtable_0.3.0          codetools_0.2-16      memoise_1.1.0        
[29] Biobase_2.42.0        IRanges_2.16.0        Cairo_1.5-12.2        parallel_3.5.3       
[33] AnnotationDbi_1.44.0  preprocessCore_1.44.0 Rcpp_1.0.5            acepack_1.4.1        
[37] xtable_1.8-4          scales_1.1.1          BiocManager_1.30.10   S4Vectors_0.20.1     
[41] annotate_1.60.1       XVector_0.22.0        bit_4.0.4             png_0.1-7            
[45] ggplot2_3.3.2         digest_0.6.25         grid_3.5.3            tools_3.5.3          
[49] bitops_1.0-6          magrittr_1.5          RCurl_1.98-1.2        RSQLite_2.2.0        
[53] tibble_3.0.3          Formula_1.2-3         crayon_1.3.4          pkgconfig_2.0.3      
[57] ellipsis_0.3.1        Matrix_1.2-18         affyPLM_1.58.0        rstudioapi_0.11      
[61] R6_2.4.1              compiler_3.5.3
R Microarray • 164 views
Entering edit mode

Could you check the results of BiocManager::valid() to see if you have a valid installation of Bioconductor?

For What Its Worth there have been newer R releases and to stay up to date with latest versions of packages it is recommended if possible to update to the current R 4.0.


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