News:ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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Johannes Rainer ★ 2.1k
@johannes-rainer-6987
Last seen 11 days ago
Italy

Dear all,

ensembldb EnsDb databases with gene, transcript and protein annotations for all species (243) from Ensembl release 101 have been added to AnnotationHub:

> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2020-04-27
> query(ah, c("EnsDb", "v101"))
AnnotationHub with 243 records
# snapshotDate(): 2020-04-27
# $dataprovider: Ensembl
# $species: Zonotrichia albicollis, Zalophus californianus, Xiphophorus macu...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype 
# retrieve records with, e.g., 'object[["AH83119"]]' 

            title                                         
  AH83119 | Ensembl 101 EnsDb for Anser brachyrhynchus    
  AH83120 | Ensembl 101 EnsDb for Astatotilapia calliptera
  ...       ...                                           
  AH83360 | Ensembl 101 EnsDb for Zonotrichia albicollis  
  AH83361 | Ensembl 101 EnsDb for Zalophus californianus  

cheers, jo

EnsDb ensembldb annotation AnnotationHub News • 1.9k views
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Thanks Johannes for your continuous work on this! Very useful and much appreciated.

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Thanks Jo! Very helpful

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