Entering edit mode
Dear all,
ensembldb
EnsDb
databases with gene, transcript and protein annotations for all species (243) from Ensembl release 101 have been added to AnnotationHub
:
> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2020-04-27
> query(ah, c("EnsDb", "v101"))
AnnotationHub with 243 records
# snapshotDate(): 2020-04-27
# $dataprovider: Ensembl
# $species: Zonotrichia albicollis, Zalophus californianus, Xiphophorus macu...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
# coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
# rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["AH83119"]]'
title
AH83119 | Ensembl 101 EnsDb for Anser brachyrhynchus
AH83120 | Ensembl 101 EnsDb for Astatotilapia calliptera
... ...
AH83360 | Ensembl 101 EnsDb for Zonotrichia albicollis
AH83361 | Ensembl 101 EnsDb for Zalophus californianus
cheers, jo
Thanks Johannes for your continuous work on this! Very useful and much appreciated.
Thanks Jo! Very helpful