News:ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
0
2
Entering edit mode
Johannes Rainer ★ 1.9k
@johannes-rainer-6987
Last seen 4 weeks ago
Italy

Dear all,

ensembldb EnsDb databases with gene, transcript and protein annotations for all species (243) from Ensembl release 101 have been added to AnnotationHub:

> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2020-04-27
> query(ah, c("EnsDb", "v101"))
AnnotationHub with 243 records
# snapshotDate(): 2020-04-27
# $dataprovider: Ensembl
# $species: Zonotrichia albicollis, Zalophus californianus, Xiphophorus macu...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype 
# retrieve records with, e.g., 'object[["AH83119"]]' 

            title                                         
  AH83119 | Ensembl 101 EnsDb for Anser brachyrhynchus    
  AH83120 | Ensembl 101 EnsDb for Astatotilapia calliptera
  ...       ...                                           
  AH83360 | Ensembl 101 EnsDb for Zonotrichia albicollis  
  AH83361 | Ensembl 101 EnsDb for Zalophus californianus  

cheers, jo

EnsDb ensembldb annotation AnnotationHub News • 189 views
ADD COMMENT
1
Entering edit mode

Thanks Johannes for your continuous work on this! Very useful and much appreciated.

ADD REPLY
1
Entering edit mode

Thanks Jo! Very helpful

ADD REPLY

Login before adding your answer.

Traffic: 417 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6