Bioconductor EnsDb

Showing : EnsDb • reset

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by jon.klonowski ▴ 40

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EnsDb ensembldb annotation AnnotationHub News

3.1 years ago Johannes Rainer ★ 2.0k

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annotation ensembldb EnsDb AnnotationHub News

3.8 years ago Johannes Rainer ★ 2.0k

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GRanges ChIPseeker annotatePeak TxDb EnsDb

updated 4.6 years ago by Johannes Rainer ★ 2.0k • written 4.6 years ago by foehn ▴ 80

4 results • Page 1 of 1

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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…

Answer: ''Model_Matrix'' error by Gordon Smyth 48k

This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…

Votes

Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

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