Entering edit mode
hi, I have know I should use vst and rlog data for cox model in deseq2 analysis, but if I want to use geo data to validate my model, can I directly apply the model to my geo data, or should I scale data both in geo and tcga before build and validate my model? thanks a lot
linouhao, could you also (in the future) not ask the same question in 2 locations like this? - You had already asked here ( https://support.bioconductor.org/p/133615/#133682 ), where I had taken time to respond, more or less adopting a similar stance as Michael.