Question: How to update the data in an experimental data package
1
gravatar for paul.theodor.pyl
4.9 years ago by
Germany
paul.theodor.pyl10 wrote:

Hi there,

I am the maintainer of an experimentdata package (h5vcData) and I want to update the contents to the new genome release version. I realised that there is some separation between the package itself and the data it contains, so a simple

svn co https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/h5vcData

doesn't give me access to the actual data that I need to modify.

Thanks for suggestions on how to handle this.

- Paul

 

experimentdata update • 712 views
ADD COMMENTlink modified 4.9 years ago by Laurent Gatto1.2k • written 4.9 years ago by paul.theodor.pyl10

Hi Paul,

Please remember that any question about the development of your package is better asked on the bioc-devel mailing list. So we can keep this support site clean and focused on helping the end users. Thanks!

H.

 

ADD REPLYlink written 4.9 years ago by Hervé Pagès ♦♦ 14k
Answer: How to update the data in an experimental data package
0
gravatar for Dan Tenenbaum
4.9 years ago by
Dan Tenenbaum8.2k
United States
Dan Tenenbaum8.2k wrote:

The data is in:

 

https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/h5vcData/

 

Dan

ADD COMMENTlink written 4.9 years ago by Dan Tenenbaum8.2k
Answer: How to update the data in an experimental data package
0
gravatar for Laurent Gatto
4.9 years ago by
Laurent Gatto1.2k
Belgium
Laurent Gatto1.2k wrote:

Note also that the data and ./inst/extdata live in a different repository than the rest of the package, and must be commited independently. See the 'Experiment Data Packages' in http://master.bioconductor.org/developers/how-to/source-control/ and the REAMDE file [1] for details.

Hope this helps.

Laurent

[1] https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/README.txt

ADD COMMENTlink written 4.9 years ago by Laurent Gatto1.2k
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