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experimentdata
•
reset
1
vote
8
replies
1.3k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 4.7 years ago by
shepherl
3.6k
1
vote
1
reply
514
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 15 months ago by
ATpoint
★ 3.6k • written 15 months ago by
Mohamed
▴ 20
0
votes
5
replies
1.1k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.2 years ago • updated 19 months ago
shepherl
3.6k
2
votes
2
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.0 years ago • updated 2.6 years ago
shepherl
3.6k
1
vote
2
replies
1.2k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.2 years ago • updated 3.1 years ago
shepherl
3.6k
0
votes
0
replies
638
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
3.8 years ago
shepherl
3.6k
0
votes
1
reply
719
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
3.9 years ago
shepherl
3.6k
0
votes
0
replies
747
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.1 years ago
shepherl
3.6k
0
votes
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
4.2 years ago • updated 4.1 years ago
shepherl
3.6k
0
votes
0
replies
721
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.3 years ago • updated 4.2 years ago
shepherl
3.6k
0
votes
1
reply
895
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
4.4 years ago • updated 4.3 years ago
shepherl
3.6k
0
votes
3
replies
912
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.5 years ago
shepherl
3.6k
0
votes
1
reply
742
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
4.6 years ago
shepherl
3.6k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
4.8 years ago
shepherl
3.6k
0
votes
0
replies
969
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
5.6 years ago
shepherl
3.6k
0
votes
0
replies
950
views
How to load additional data from fcs files
fcs
concentration
experimentdata
6.6 years ago
jurg.spaak
• 0
0
votes
1
reply
1.4k
views
Extract the gate in the data file (fcs file) from MoFlo Astrios
gate
cytometry
experimentdata
stategy
MoFlo Astrios
6.9 years ago
cr
• 0
1
vote
2
replies
1.1k
views
Submitting an experimental data package
submit package
experimentdata
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
mark.dunning
• 0
1
vote
3
replies
1.4k
views
How to update the data in an experimental data package
experimentdata
update
updated 9.2 years ago by
Laurent Gatto
1.6k • written 9.2 years ago by
paul.theodor.pyl
▴ 10
0
votes
2
replies
2.8k
views
Biobase - Error: ExpressionSet
Microarray
Annotation
GO
ExperimentData
Biobase
Microarray
Annotation
GO
ExperimentData
updated 10.2 years ago by
Laurent Gatto
1.6k • written 10.2 years ago by
Lisa Cohen
▴ 50
0
votes
4
replies
8.9k
views
Error while building ExpressionSet from scratch....
ExperimentData
LMGene
ExperimentData
LMGene
updated 12.1 years ago by
Martin Morgan
25k • written 12.1 years ago by
Bas Jansen
▴ 150
0
votes
1
reply
1.3k
views
justRMA {affy} error
Annotation
ExperimentData
cdf
Annotation
ExperimentData
cdf
updated 12.3 years ago by
Martin Morgan
25k • written 12.3 years ago by
Julio Alejandro Di Rienzo
▴ 10
0
votes
2
replies
1.8k
views
RMA implemented in oligo package vs affy package
ExperimentData
cdf
affy
PROcess
oligo
ExperimentData
cdf
affy
PROcess
oligo
14.7 years ago
heyi xiao
▴ 360
0
votes
0
replies
1.3k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
beadarray
Annotation
ExperimentData
beadarray
14.7 years ago
Anne-Kristin Stavrum
▴ 10
0
votes
0
replies
1.2k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
Cancer
Biobase
beadarray
Annotation
ExperimentData
Cancer
14.7 years ago
Martin Morgan
25k
0
votes
3
replies
1.6k
views
ExpressionSet or MAList
Annotation
ExperimentData
Cancer
Annotation
ExperimentData
Cancer
updated 15.6 years ago by
Gordon Smyth
49k • written 15.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.5k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation
ExperimentData
cdf
affy
Annotation
ExperimentData
cdf
affy
updated 15.7 years ago by
James W. MacDonald
64k • written 15.7 years ago by
Langdon W B
▴ 20
0
votes
3
replies
2.0k
views
ReadAffy Error
Annotation
ExperimentData
cdf
affy
affyio
Annotation
ExperimentData
cdf
affy
affyio
updated 16.3 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 16.3 years ago by
Markus Schmidberger
▴ 380
0
votes
6
replies
3.2k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 16.3 years ago by
Weiyin Zhou
▴ 220 • written 16.3 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.6k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
16.3 years ago
Min Wook Kim
▴ 20
30 results • Page
1 of 1
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Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
by
James W. MacDonald
64k
There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
• 0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B
by
Mike Smith
★ 6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
Votes
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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