Question: problems in biocLite
0
gravatar for sara.m79
5.1 years ago by
sara.m790
sara.m790 wrote:

Hi, I am Sara a post doc from the University Roma Tre in Rome. I am trying to install RHugin which has dependencies on the Bioconductor packages graph and Rgraphviz. When I run the command

source("http://bioconductor.org/biocLite.R")

R returns an error message that it cannot connect and a warning message in file(filename, "r", encoding = encoding) :
  it cannot connect to 'bioconductor.org' .

Apparently there are not problems in internet connection.

Could you help me, please?

Sara

bioclite installation • 927 views
ADD COMMENTlink modified 5.1 years ago by Martin Morgan ♦♦ 24k • written 5.1 years ago by sara.m790
2

Please edit your post to include the exact output of the command 

source("http://bioconductor.org/biocLite.R")

Also, please include the output of the command

sessionInfo()

Confirm that you can access http://bioconductor.org/biocLite.R from your web browser.

Perhaps the problem is related to a 'proxy'; see How to install BioConductor packages with a computer behind a proxy. On windows you might try setInternet2(TRUE)

ADD REPLYlink modified 5.1 years ago • written 5.1 years ago by Martin Morgan ♦♦ 24k
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