Showing : biocLite • reset
0
votes
2
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823
views
biocLite R Version
biocLite
updated 15 months ago by 550 • written 15 months ago by • 0
1
vote
2
replies
1.7k
views
BiocLite installation issues
BiocLite
updated 16 months ago by 3.4k • written 16 months ago by ▴ 10
0
votes
1
reply
326
views
I have installed bioconductor, R still asks me to install it
bioconductor biocLite GEOquery package
updated 2.0 years ago by 13k • written 2.0 years ago by • 0
6
votes
3
replies
7.8k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 2.2 years ago by 2.9k • written 2.2 years ago by • 0
1
vote
3
replies
1.0k
views
update all/some/none how to set default to "update all"
biocLite update all default ask
updated 2.9 years ago by ▴ 30 • written 2.9 years ago by ▴ 10
5
votes
11
replies
1.7k
views
Error while installing Phyloseq using biocLite
bioclite phyloseq install error
3.3 years ago khp ▴ 30
2
votes
2
replies
602
views
biocLite doesn't work
bioconductor bioclite
updated 3.3 years ago by 2.9k • written 3.3 years ago by • 0
5
votes
5
replies
1.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 3.4 years ago by 25k • written 3.4 years ago by ▴ 30
1
vote
4
replies
1.0k
views
Problem installing Bioconductor
biocLite
updated 3.4 years ago by 25k • written 3.4 years ago by • 0
1
vote
2
replies
889
views
Trouble Installing Bioconductor Basic Packages
R bioclite installation problem linuxmint virtualbox
updated 3.4 years ago by 58k • written 3.4 years ago by • 0
0
votes
2
replies
828
views
Unable to install Bioconductor packages following R upgrade to 3.5.1
bioclite bioconductor
updated 3.5 years ago by 25k • written 3.5 years ago by • 0
3
votes
5
replies
899
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 3.6 years ago by 25k • written 3.6 years ago by ▴ 30
1
vote
2
replies
2.4k
views
dyld: Library not loaded: @rpath/libc++abi.1.dylib
DESeq2 biocLite
updated 3.7 years ago by ★ 5.3k • written 3.7 years ago by • 0
1
vote
3
replies
808
views
Error biocLite() newest version of ChAMP
R bioclite champ
3.8 years ago rosa_hegi ▴ 10
0
votes
2
replies
901
views
Issues installing packages miniconda environment
bioclite deseq2 miniconda packages
3.9 years ago cpat • 0
0
votes
4
replies
1.8k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 3.9 years ago by ★ 1.3k • written 4.3 years ago by ▴ 70
6
votes
2
replies
1.1k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 3.9 years ago by ★ 5.3k • written 3.9 years ago by ▴ 10
0
votes
9
replies
2.5k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 4.0 years ago by ▴ 80 • written 5.6 years ago by ▴ 40
1
vote
1
reply
2.2k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
0
votes
1
reply
805
views
biocLite("lpsymphony") consistently fails with linker errors (can't find static libraries to link)
lpsymphony package installation bioclite
updated 4.1 years ago by ▴ 10 • written 4.2 years ago by • 0
0
votes
2
replies
580
views
Predefine default siteRepos for biocLite
biocinstaller bioclite
4.2 years ago Martin Marcher • 0
0
votes
4
replies
864
views
How could I upgrade 191 old packages in my directory?
bioclite
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
0
votes
2
replies
2.2k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 4.2 years ago by 58k • written 4.2 years ago by ★ 2.0k
2
votes
5
replies
929
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor bioclite
updated 4.2 years ago by 2.9k • written 4.2 years ago by ▴ 10
0
votes
2
replies
766
views
problem in installing bioClite
installation problem biocLite
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
6
votes
8
replies
6.1k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
4.3 years ago p.janitza ▴ 50
0
votes
2
replies
993
views
How to permanently add custom repositories to BiocLite
bioclite repository repos
4.3 years ago arnau.bria • 0
4
votes
4
replies
5.0k
views
Problems install R XML package on CentOS 7
r packages centos7 bioclite libxml2
updated 4.4 years ago by ▴ 110 • written 4.4 years ago by ▴ 10
0
votes
2
replies
5.3k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
4.4 years ago sebastien200109 • 0
0
votes
1
reply
867
views
Cannot load bioclite packages
bioclite
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
0
votes
4
replies
1.0k
views
biocLITE annotation Rstudio
annotation bioclite
updated 4.5 years ago by 58k • written 4.5 years ago by • 0
0
votes
0
replies
504
views
using BiocLite() on Ubuntu Xenial with its default R 3.2.3 release
bioclite
4.5 years ago howarth.mailing.lists ▴ 10
0
votes
3
replies
961
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 4.6 years ago by 58k • written 4.6 years ago by • 0
0
votes
5
replies
1.6k
views
reactome.db installation problem
reactome.db bioclite
4.7 years ago Jan-Jaap • 0
0
votes
4
replies
1.4k
views
Bioconductor - not updating
bioconductor R bioclite
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
1
reply
908
views
Package dependency GenomicFeatures is installed but cannot be found
genomicfeatures bioclite package installation
4.8 years ago cqe20 • 0
0
votes
0
replies
569
views
HowTo: install just html help on top of existing packages
bioclite package installation update
4.9 years ago Malcolm Cook ★ 1.5k
0
votes
4
replies
3.3k
views
Problems with RSQLite compilation
rsqlite bioconductor bioclite rcpp.h
updated 5.0 years ago by 25k • written 5.0 years ago by • 0
2
votes
6
replies
912
views
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
bioclite bioconductor summarizeoverlaps genomicfeatures genomicalignments
updated 5.1 years ago by 35k • written 5.1 years ago by • 0
2
votes
1
reply
4.2k
views
Upgrade to Bioconductor 3.4 - problems with R
r update upgrade bioclite
updated 5.2 years ago by 58k • written 5.2 years ago by • 0
0
votes
1
reply
477
views
News: Bioc 'devel' repository temporarily not available
biocLIte News
5.3 years ago Martin Morgan 25k
8
votes
6
replies
7.9k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
5.5 years ago kjo ▴ 60
0
votes
1
reply
858
views
problem installing biocLite, MotifDb.
motifdb bioclite
updated 5.6 years ago by 15k • written 5.6 years ago by • 0
0
votes
2
replies
764
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite biocupgrade
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
8
votes
4
replies
6.1k
views
Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
5.7 years ago enricoferrero ▴ 590
0
votes
3
replies
850
views
Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 40
0
votes
1
reply
1.9k
views
Bioconductor installation problem
installation biocLite
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
2
votes
6
replies
32k
views
Installing Bioclite.R Package
Bioclite install
6.1 years ago louiseapps2 • 0
1
vote
2
replies
639
views
bioclite behaviour with defunct packages
bioclite
6.1 years ago David.Duffy ▴ 10
0
votes
6
replies
1.9k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite gcc install fedora
updated 6.2 years ago by 25k • written 6.2 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: Need help for ProStaR Stand-alone install by benoit.marchand • 0
Thank you for answering. I've just updated to Prostar v1.26.3 and confirm that the **Prostar()** command **now works** in R for me on linu…
Answer: airway package not compatible with R version 4.1.2 (2021-11-01) by ATpoint ▴ 970
`data(airway)` is your friend. The CRAN error comes from the fact that it is not a CRAN package, not that it is a version problem itself.
Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by Lluís Revilla Sancho ▴ 660
I think it would help if you try again to install it via `BiocManager::install("airway")` and report the exact text output (without quittin…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by Michael Love 35k
This looks as expected with the control genes centered on the x-axis (yes, these can have high variance, this is discussed in work by Risso…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by argonvibio • 0
Hello Michael, and thank you for your reply. I have done as you described, estimating size factors with controlGenes before DESeq, but the…
Votes
Comment: Need help for ProStaR Stand-alone install
Emirical Bayesian shrinkage for dispertion/LFC estimation
C: Emirical Bayesian shrinkage for dispertion/LFC estimation
A: Emirical Bayesian shrinkage for dispertion/LFC estimation
Comment: airway package not compatible with R version 4.1.2 (2021-11-01)
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