Question

mzR installation problem

1

Entering edit mode

yizhong99 ▴ 10

@yizhong99-6953

Last seen 9.5 years ago

United States

I used R version 3.1.0, when I try to install mzR package

biocLite('mzR')

The installation will be fail it give me

 rnetCDF.h:1:20: error: netcdf.h: No such file or directory

 rnetCDF.c:26: error: 'NC_MAX_VAR_DIMS' undeclared (first use in this

 function)

 make: *** [rnetCDF.o] Error 1

 ERROR: compilation failed for package 'mzR'

Many thanks for help

software error mzr installation • 2.4k views

ADD COMMENT • link updated 9.5 years ago by Laurent Gatto 1.6k • written 9.5 years ago by yizhong99 ▴ 10

score 1 · Answer 1 · 2014-10-30

1

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Laurent Gatto 1.6k

@laurent-gatto-5645

Last seen 2 days ago

Belgium

mzR has a few system requirements, including NetCDF. On debian systems, the following should get you going: apt-get install libnetcdf-dev.

Hope this helps.

Laurent

ADD COMMENT • link 9.5 years ago Laurent Gatto 1.6k

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I tried the command you suggested on the terminal. After this if I try to install mzR in R, it just doesn't stop seems like it has gone into some circular loop.

ADD REPLY • link 6.5 years ago sgupt46 • 0