mzR installation problem
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yizhong99 ▴ 10
@yizhong99-6953
Last seen 6.9 years ago
United States

I used R version 3.1.0, when I try to install mzR package

biocLite('mzR')

The installation will be fail it give me

 rnetCDF.h:1:20: error: netcdf.h: No such file or directory

 rnetCDF.c:26: error: 'NC_MAX_VAR_DIMS' undeclared (first use in this

 function)

 make: *** [rnetCDF.o] Error 1

 ERROR: compilation failed for package 'mzR'

 

Many thanks for help

software error mzr installation • 1.8k views
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@laurent-gatto-5645
Last seen 10 hours ago
Belgium

mzR has a few system requirements, including NetCDF. On debian systems, the following should get you going: apt-get install libnetcdf-dev.

Hope this helps.

Laurent

 

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I tried the command you suggested on the terminal. After this if I try to install mzR in R, it just doesn't stop seems like it has gone into some circular loop.

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