I'm working with this type of array(hugene 2.0) for the first time, i have CEL files for it and i used ReadAffy() but it didn't work. I've got this message:
> raw <- ReadAffy()
The affy package is not designed for this array type.
Please use either the oligo or xps package.
I've tried to download xps, it said:
Bioconductor version 3.0 (BiocInstaller 1.16.2), ?biocLite for help
Using Bioconductor version 3.0 (BiocInstaller 1.16.2), R version 3.1.3.
Installing package(s) 'xps'
package ‘xps’ is available as a source package but not as a binary
package ‘xps’ is not available (as a binary package for R version 3.1.3)
What do i have to do so my CEL file is read in R so i can normalize it do limma with it. Or is there a way to convert my CEL file to CDF file???
Thank you for your answers.