Biostar Pd.hugene.2.0.st

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384

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clariom oligo affycoretools pd.hugene.2.0.st

updated 2.5 years ago by James W. MacDonald 58k • written 2.5 years ago by svlachavas ▴ 780

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2.8k

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microarray oligo affycoretools pd.hugene.2.0.st hugene20sttranscriptcluster.db

updated 4.6 years ago by James W. MacDonald 58k • written 4.6 years ago by svlachavas ▴ 780

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823

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oligo rnadegradationplot affymetrix microarrays pd.hugene.2.0.st

5.6 years ago Biologist ▴ 90

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1.3k

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limma microarray pd.hugene.2.0.st hugene20 oligo

5.6 years ago hakimelakhrass • 0

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987

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annotation oligo pd.hugene.2.0.st

5.9 years ago sylvia ▴ 10

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1.0k

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boxplot microarray pd.hugene.2.0.st

6.4 years ago kanacska ▴ 10

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1.8k

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affy pd.hugene.2.0.st hugene20 annotation microarray

6.5 years ago kanacska ▴ 10

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1.1k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 6.7 years ago by Gordon Smyth 43k • written 6.7 years ago by Paulo Nuin ▴ 200

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Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

Cross posted to Biostars https://www.biostars.org/p/9490039/

Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…

Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k

The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k

The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …

Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850

Cross posted at Biostars: https://www.biostars.org/p/9490151/

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Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2

Answer: Log fold change interpretation of time series with Wald test

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Popular Question to Hans-Ulrich Klein ▴ 330