Showing : pd.hugene.2.0.st • reset
1
vote
5
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698
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Correct annotation R package for human clariom array analysis
clariom oligo affycoretools pd.hugene.2.0.st
updated 4.0 years ago by 62k • written 4.0 years ago by ▴ 810
9
votes
6
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3.4k
views
Preprocessing of Human Gene 2.0 ST microarrays with oligo R package and annotation options
microarray oligo affycoretools pd.hugene.2.0.st hugene20sttranscriptcluster.db
updated 6.1 years ago by 62k • written 6.1 years ago by ▴ 810
0
votes
0
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1.0k
views
Reading Affymetrix data from pd.hugene.2.0.st using oligo for RNA degradation plot
oligo rnadegradationplot affymetrix microarrays pd.hugene.2.0.st
7.1 years ago Biologist ▴ 110
4
votes
10
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1.8k
views
Limma/oligo always crashing
limma microarray pd.hugene.2.0.st hugene20 oligo
7.1 years ago hakimelakhrass • 0
1
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5
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1.3k
views
HuGene2.0 array annotation
annotation oligo pd.hugene.2.0.st
7.4 years ago sylvia ▴ 10
1
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8
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1.3k
views
boxplot, microarray, hugene 2.0 st
boxplot microarray pd.hugene.2.0.st
8.0 years ago • updated 7.9 years ago kanacska ▴ 10
0
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3
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2.3k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy pd.hugene.2.0.st hugene20 annotation microarray
8.0 years ago kanacska ▴ 10
6
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5
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1.4k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes expression affymetrix pd.hugene.2.0.st limma
updated 8.2 years ago by 47k • written 8.2 years ago by ▴ 200
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Comment: deseq2 normalization and statistical method by ATpoint ★ 2.4k
Either the company provides you full code and software versions or (imo) their anslysis is basically useless as not reproducible.
Answer: HISAT2 mapping by ATpoint ★ 2.4k
hisat2 is not a Bioconductor package. Please ask at biostars.org or elsewhere.
Comment: deseq2 normalization and statistical method by SH • 0
Thank you for answering my repeated question. Although the documentation states that normalization is not necessary, I was confused because…
Answer: Reducing dataset size to improve run time for fitGAM in tradeSeq by Koen Van den Berge ▴ 180
Hi, We recommend keeping the entire count matrix and using the genes argument. This way, you still use the data from all genes to do th…
Comment: Multiple issues reading in peak sets with Diffbind by LV • 0
I have also had this problem today with a sample sheet that appears to be just like another sheet I previously used. I also had narrow as t…
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Answer: deseq2 normalization and statistical method
Answer: Question about filter by expression (filterByExpr) in edgeR
Answer: Question about filter by expression (filterByExpr) in edgeR
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Comment: Help with error install csaw
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