Biostar Pd.hugene.2.0.st

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clariom oligo affycoretools pd.hugene.2.0.st

updated 2.3 years ago by James W. MacDonald 57k • written 2.3 years ago by svlachavas ▴ 780

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microarray oligo affycoretools pd.hugene.2.0.st hugene20sttranscriptcluster.db

updated 4.4 years ago by James W. MacDonald 57k • written 4.4 years ago by svlachavas ▴ 780

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798

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oligo rnadegradationplot affymetrix microarrays pd.hugene.2.0.st

5.3 years ago Biologist ▴ 90

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limma microarray pd.hugene.2.0.st hugene20 oligo

5.4 years ago hakimelakhrass • 0

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annotation oligo pd.hugene.2.0.st

5.6 years ago sylvia ▴ 10

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boxplot microarray pd.hugene.2.0.st

6.2 years ago kanacska ▴ 10

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affy pd.hugene.2.0.st hugene20 annotation microarray

6.3 years ago kanacska ▴ 10

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 6.4 years ago by Gordon Smyth 43k • written 6.4 years ago by Paulo Nuin ▴ 200

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Comment: Rsamtools: how to output base positions on reads by Martin Morgan 25k

Can you add to your question to provide a more complete example of the output that you are after? Have you explored the `pileup()` command?

Comment: IHW and correlated covariates by Michael Love 33k

hi Nikos, I have a new problem that would benefit IHW with two ordinal covariates, do you have any thoughts on approaching this while pres…

Comment: Determining number of genes in each module based on color in WGCNA package by schum266 • 0

For anyone who might be interested. I was able to figure this out. It's very easy.... just set numericLabels = FALSE. (*sigh*) ``` net = …

Comment: Research fellow in immunology by ATpoint ▴ 640

Try starting a new R session and then load the package again. If that fails then manually install ellipsis version 0.3.2 or greater. By the…

Answer: Creating the correct model to account for paired-samples (patient-effect) help n by Gordon Smyth 43k

In the limma User's Guide, Section 9.4.1 *Paired Samples* covers paired designs. In the edgeR User's Guide, it is Section 3.4.1.

Votes

A: using duplicateCorrelation with limma+voom for RNA-seq data

Comment: What is the correct use of removeBatchEffect's design parameter

Answer: DESeq2 for allele-specific expression with contrasts between conditions

C: DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data

Awards • All

Scholar to Martin Morgan 25k

Prophet to Michael Love 33k