NMF Package error
1
0
Entering edit mode
@deepak-tanwar-8113
Last seen 5 months ago
McGill University, Canada

I am getting following error while using plotting the calculated results from NMF package.

 

> dim(data)

# 12831 36


> res <- nmf(x = data, rank = 2)

> basismap(res)

# Error in match(x, table, nomatch = 0L) : node stack overflow




> sessionInfo()
                                                                                                                                                                         
R version 3.1.3 (2015-03-09)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
 [1] RColorBrewer_1.1-2  doParallel_1.0.8    iterators_1.0.7
 [4] foreach_1.4.2       NMF_0.20.6          synchronicity_1.1.4
 [7] bigmemory_4.4.6     BH_1.58.0-1         bigmemory.sri_0.1.3
[10] Biobase_2.26.0      BiocGenerics_0.12.1 cluster_2.0.2
[13] rngtools_1.2.4      pkgmaker_0.22       registry_0.3

loaded via a namespace (and not attached):
 [1] codetools_0.2-11 colorspace_1.2-6 compiler_3.1.3   digest_0.6.8
 [5] ggplot2_1.0.1    grid_3.1.3       gridBase_0.4-7   gtable_0.1.2
 [9] magrittr_1.5     MASS_7.3-42      munsell_0.4.2    plyr_1.8.3
[13] proto_0.3-10     Rcpp_0.11.6      reshape2_1.4.1   scales_0.2.5
[17] stringi_0.5-5    stringr_1.0.0    tools_3.1.3      xtable_1.7-4
NMF bioconductor R • 1.6k views
ADD COMMENT
0
Entering edit mode
@martin-morgan-1513
Last seen 4 months ago
United States

NMF is a CRAN package; see it's BugReports: field.

ADD COMMENT

Login before adding your answer.

Traffic: 959 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6