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I am getting following error while using plotting the calculated results from NMF package.
> dim(data)
# 12831 36
> res <- nmf(x = data, rank = 2)
> basismap(res)
# Error in match(x, table, nomatch = 0L) : node stack overflow
> sessionInfo()
R version 3.1.3 (2015-03-09)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] RColorBrewer_1.1-2 doParallel_1.0.8 iterators_1.0.7
[4] foreach_1.4.2 NMF_0.20.6 synchronicity_1.1.4
[7] bigmemory_4.4.6 BH_1.58.0-1 bigmemory.sri_0.1.3
[10] Biobase_2.26.0 BiocGenerics_0.12.1 cluster_2.0.2
[13] rngtools_1.2.4 pkgmaker_0.22 registry_0.3
loaded via a namespace (and not attached):
[1] codetools_0.2-11 colorspace_1.2-6 compiler_3.1.3 digest_0.6.8
[5] ggplot2_1.0.1 grid_3.1.3 gridBase_0.4-7 gtable_0.1.2
[9] magrittr_1.5 MASS_7.3-42 munsell_0.4.2 plyr_1.8.3
[13] proto_0.3-10 Rcpp_0.11.6 reshape2_1.4.1 scales_0.2.5
[17] stringi_0.5-5 stringr_1.0.0 tools_3.1.3 xtable_1.7-4
