Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
NMF
•
reset
0
votes
1
reply
2.8k
views
NMF installation with current R version
NMF
Biobase
updated 23 months ago by
shepherl
3.8k • written 23 months ago by
Abhishek
• 0
5
votes
5
replies
1.7k
views
Running NMF for single cell
NMF
scater
3.5 years ago
lirongrossmann
▴ 40
0
votes
0
replies
412
views
NMF in single cell analysis
NMF
ZeiselBrainData
3.8 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.3k
views
Error in NMF estimation
MutationalPatterns
NMF
4.9 years ago
TRASA
• 0
0
votes
7
replies
3.0k
views
nmf function not working
somaticsignatures
NMF
updated 5.5 years ago by
Xin
• 0 • written 5.8 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
784
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.9 years ago
Seymoo
• 0
0
votes
1
reply
1.0k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 6.1 years ago by
shepherl
3.8k • written 6.1 years ago by
samuel.fux
• 0
0
votes
6
replies
2.8k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 6.5 years ago by
grimmmmer
• 0 • written 7.2 years ago by
ns
• 0
0
votes
4
replies
2.3k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
noname
• 0
0
votes
0
replies
1.2k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
8.2 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.2k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
thrabe
• 0
0
votes
1
reply
1.6k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 8.4 years ago by
Jeff Leek
▴ 650 • written 8.4 years ago by
kw10
• 0
0
votes
1
reply
1.4k
views
NMF Package error
NMF
bioconductor
R
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Deepak Tanwar
▴ 10
13 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
• 0
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Awards
• All
Popular Question
to
James W. MacDonald
65k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Locations
• All
United States,
just now
France,
3 minutes ago
Sweden,
6 minutes ago
The Netherlands,
7 minutes ago
Sweden,
8 minutes ago
Traffic: 1133 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6