I am studying human methylome using illumina 450k beadchip. I am analyzing the data using minfi bioconductor package. My study includes 3 groups and I want to compare the methylation signatures among the three groups. I have followed the initial quality control and SWAN normalization steps and finally used dmpFinder().
Can anyone guide me in how to inerpret the result?
I want to find out loci that are hypo or hyper methylated in each pairwise group comparisons.
the header of the result is mentioned below: