Interepretation of dmpFinder result in minfi
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@ankitachatterjee88-8592
Last seen 8.6 years ago
United States

Hello everyone,

I am studying human methylome using illumina 450k beadchip. I am analyzing the data using minfi bioconductor package. My study includes 3 groups and I want to compare the methylation signatures among the three groups. I have followed the initial quality control and SWAN normalization steps and finally used dmpFinder().

Can anyone guide me in how to inerpret the result?

I want to find out loci that are hypo or hyper methylated in each pairwise group comparisons.

the header of the result is mentioned below:

cpgID ,intercept ,f pval, qval, chr pos, strand, Name,.......
microarray illuminahumanmethylation450k.db minfi • 1.5k views
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