Showing : illuminahumanmethylation450k.db • reset
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Illumina 450k Manifest: Probes Mapping to Multiple RefGene Groups and Names
illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation
updated 27 days ago by • 0 • written 6.6 years ago by ▴ 10
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2
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585
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Using topGO for GO Enrichment on methylation markers (Illumina 450k)
topGO illuminahumanmethylation450k.db
4.2 years ago dusan.petrovic • 0
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Error while using ChAMP
champ methylation illuminahumanmethylation450k.db illumina450k
updated 5.5 years ago by ▴ 90 • written 5.5 years ago by ▴ 20
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4
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1.2k
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Aclust package: IlluminaHumanMethylation450kCHR37 not found
illuminahumanmethylation450k.db aclust methylation annotation illumina
updated 5.7 years ago by • 0 • written 5.8 years ago by • 0
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1.0k
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install IlluminaHumanMethylation450k.db error
illuminahumanmethylation450k.db
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 190
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10
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 6.2 years ago by ▴ 550 • written 6.2 years ago by ▴ 50
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error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 6.3 years ago by • 0 • written 6.8 years ago by • 0
2
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12
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4.4k
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‘IlluminaHumanMethylation450k.db’ had non-zero exit status
IlluminaHumanMethylation450k.db
updated 6.3 years ago by • 0 • written 7.6 years ago by • 0
2
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3
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1.5k
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IlluminaHumanMethylation450k.db installation error
IlluminaHumanMethylation450k.db
updated 6.4 years ago by ★ 8.2k • written 6.4 years ago by ▴ 180
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4
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1.5k
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preprocessFunnorm in minfi
minfi 450k illuminahumanmethylation450k.db normalization
updated 6.4 years ago by 59k • written 6.4 years ago by • 0
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4
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1.6k
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IlluminaHumanMethylation450k.db - error on trying to insall
IlluminaHumanMethylation450k.db
6.6 years ago Brian Smith ▴ 120
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3
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1.5k
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minfi - estimatecellcount function
minfi illuminahumanmethylation450kanno.ilmn12.hg19 illuminahumanmethylation450k.db
updated 6.8 years ago by 6.5k • written 6.8 years ago by ▴ 50
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Interepretation of dmpFinder result in minfi
microarray illuminahumanmethylation450k.db minfi
6.8 years ago ankita.chatterjee88 • 0
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6
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2.8k
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Removing sex-chromosome probes from methyLumiSet
methylumi eSet illuminahumanmethylation450k.db featureFilter
updated 6.9 years ago by 59k • written 6.9 years ago by • 0
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1.8k
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Analyzing 450k Methylation from TCGA Website
minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19
7.1 years ago alejandretheodore • 0
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illumina 450k methylation: Cell composition for saliva
methylation minfi illuminahumanmethylation450k.db saliva cell composition
updated 7.1 years ago by 6.5k • written 7.1 years ago by ▴ 120
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 7.2 years ago by ▴ 80 • written 7.2 years ago by ▴ 360
17 results • Page 1 of 1
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Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq by Jess • 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue by shepherl 3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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