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Tutorial: Bioconductor on Coursera
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gravatar for Kasper Daniel Hansen
2.3 years ago by
United States
Kasper Daniel Hansen6.3k wrote:

Today we launched "Bioconductor for Genomic Data Science" on Coursera,  a one-month class on Bioconductor as part of the JHU Genomic Data Science Specialization.  As of today, all 6 classes in the specialization have launched and they will run every month. 

You can still join the class this month, if you're interested.

For the Bioconductor class see
    https://class.coursera.org/genbioconductor-004
as well as the some material on GH pages
    http://kasperdanielhansen.github.io/genbioconductor/

Best,
Kasper D. Hansen

 

ADD COMMENTlink written 2.3 years ago by Kasper Daniel Hansen6.3k

the links  to the following R scripts are not working:

GenomicRanges_GRanges.R

Usecase_AnnotationHub_GRanges.R

Biostrings_Matching.R

rtracklayer_Import.R

R_S4.R

 

can you please add them?

 

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by Assa Yeroslaviz1.3k

or can these files be downloaded from you other link?

ADD REPLYlink written 2.3 years ago by Assa Yeroslaviz1.3k

Do you mean the links on this page, e.g., GenomicRanges_GRanges.R? These 'work or me'. Maybe provide more information about the specific links you're having trouble with, and what the browser says is the problem?

ADD REPLYlink written 2.3 years ago by Martin Morgan ♦♦ 21k
Also, while I always appreciate comments on contents and dead links, perhaps this is not the right place to post this. You can send it to me personally, or - if you have joined on Coursera, use the class forums. Best, Kasper On Tue, Sep 8, 2015 at 8:08 AM, Martin Morgan [bioc] < noreply@bioconductor.org> wrote: > Activity on a post you are following on support.bioconductor.org > > User Martin Morgan <https: support.bioconductor.org="" u="" 1513=""/> wrote Comment: > Bioconductor on Coursera <https: support.bioconductor.org="" p="" 71905="" #71918="">: > > > Do you mean the links on this page > <http: kasperdanielhansen.github.io="" genbioconductor=""/>, e.g., > GenomicRanges_GRanges.R > <http: kasperdanielhansen.github.io="" genbioconductor="" html="" genomicranges_granges.html="">? > These 'work or me'. Maybe provide more information about the specific links > you're having trouble with, and what the browser says is the problem? > > ------------------------------ > > Post tags: mooc, Tutorial > > You may reply via email or visit > C: Bioconductor on Coursera >
ADD REPLYlink written 2.3 years ago by Kasper Daniel Hansen6.3k

sorry, you are right. I should have used the Coursera site.

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by Assa Yeroslaviz1.3k

the coursera links didn't work. When I clicked on them (e.g. Usecase_AnnotationHub_GRanges.R ), this is where it took me.

But it seems to work now.

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by Assa Yeroslaviz1.3k
1
Yes, the missing links was reported on the coursera forum, and I fixed them yesterday. If you're taking the class, you should really post these questions on the class board. Best, Kasper
ADD REPLYlink modified 2.3 years ago by Dan Tenenbaum ♦♦ 8.2k • written 2.3 years ago by Kasper Daniel Hansen6.3k

This is wonderful! Thank you very much for all this work.

1) Do you mind if I post this in Biostar? I am sure many people will be interested?

2) I think it will be good to have a lecture on ID conversion - e.g. from Entrez to Symbol, to RefSeq and so on. I am not sure if this is already explained in the lectures.

ADD REPLYlink written 2.2 years ago by dalloliogm40
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