Tutorial:Bioconductor on Coursera
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@kasper-daniel-hansen-2979
Last seen 19 days ago
United States

Today we launched "Bioconductor for Genomic Data Science" on Coursera,  a one-month class on Bioconductor as part of the JHU Genomic Data Science Specialization.  As of today, all 6 classes in the specialization have launched and they will run every month. 

You can still join the class this month, if you're interested.

For the Bioconductor class see
    https://class.coursera.org/genbioconductor-004
as well as the some material on GH pages
    http://kasperdanielhansen.github.io/genbioconductor/

Best,
Kasper D. Hansen

 

mooc Tutorial • 6.3k views
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the links  to the following R scripts are not working:

GenomicRanges_GRanges.R

Usecase_AnnotationHub_GRanges.R

Biostrings_Matching.R

rtracklayer_Import.R

R_S4.R

 

can you please add them?

 

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or can these files be downloaded from you other link?

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Do you mean the links on this page, e.g., GenomicRanges_GRanges.R? These 'work or me'. Maybe provide more information about the specific links you're having trouble with, and what the browser says is the problem?

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Also, while I always appreciate comments on contents and dead links, perhaps this is not the right place to post this. You can send it to me personally, or - if you have joined on Coursera, use the class forums. Best, Kasper On Tue, Sep 8, 2015 at 8:08 AM, Martin Morgan [bioc] < noreply@bioconductor.org> wrote: > Activity on a post you are following on support.bioconductor.org > > User Martin Morgan <https: support.bioconductor.org="" u="" 1513=""/> wrote Comment: > Bioconductor on Coursera <https: support.bioconductor.org="" p="" 71905="" #71918="">: > > > Do you mean the links on this page > <http: kasperdanielhansen.github.io="" genbioconductor=""/>, e.g., > GenomicRanges_GRanges.R > <http: kasperdanielhansen.github.io="" genbioconductor="" html="" genomicranges_granges.html="">? > These 'work or me'. Maybe provide more information about the specific links > you're having trouble with, and what the browser says is the problem? > > ------------------------------ > > Post tags: mooc, Tutorial > > You may reply via email or visit > C: Bioconductor on Coursera >
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sorry, you are right. I should have used the Coursera site.

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the coursera links didn't work. When I clicked on them (e.g. Usecase_AnnotationHub_GRanges.R ), this is where it took me.

But it seems to work now.

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Yes, the missing links was reported on the coursera forum, and I fixed them yesterday. If you're taking the class, you should really post these questions on the class board. Best, Kasper
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This is wonderful! Thank you very much for all this work.

1) Do you mind if I post this in Biostar? I am sure many people will be interested?

2) I think it will be good to have a lecture on ID conversion - e.g. from Entrez to Symbol, to RefSeq and so on. I am not sure if this is already explained in the lectures.

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