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Hi
Please suggest me some good motif discovery tool that should work on the mentioned data details.
I have certain number of sequences out of which a subset of sequences have have a common motif.
Hi
Please suggest me some good motif discovery tool that should work on the mentioned data details.
I have certain number of sequences out of which a subset of sequences have have a common motif.
Have you tried any of the packages in the MotifDiscovery view?
http://bioconductor.org/packages/release/BiocViews.html#___MotifDiscovery
I would start by exploring these options. In particular motifRG and rGADEM look promising even though I have no particular experience with these tools...
H.
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