Bioconductor Motifdb

Showing : motifdb • reset

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2.8k

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Motifdb

updated 2.8 years ago by gunjan.dikshit • 0 • written 4.6 years ago by snystrom ▴ 10

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2.0k

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pwm pfm jaspar motifdb

updated 5.9 years ago by Bioconductor Community 0 • written 6.0 years ago by chrisclarkson100 ▴ 50

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1.3k

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motifdb

updated 7.2 years ago by Paul Shannon ▴ 470 • written 7.2 years ago by scotronq • 0

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1.7k

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motifdb

updated 7.3 years ago by Paul Shannon ▴ 470 • written 7.3 years ago by Yiwei Niu ▴ 20

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1.8k

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MotifDb library load

updated 7.8 years ago by Paul Shannon ▴ 470 • written 7.8 years ago by Pengcheng Yang ▴ 60

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1.5k

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motifdb bioclite

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by mirzabiotech2000 • 0

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1.6k

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motifdb matchpwm motif pwmenrich pwm

9.1 years ago vinod.acear ▴ 50

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4.4k

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motif motifdb meme

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by vinod.acear ▴ 50

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2.4k

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pwmenrich MotifDB

updated 9.1 years ago by Robert Stojnic ▴ 50 • written 9.1 years ago by elliott77 • 0

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2.2k

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motifdb JASPAR transcription factor binding site

9.1 years ago Lisa Hopcroft ▴ 40

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2.7k

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BSgenome convert BSgenome PWMEnrich MotifDb

updated 10.3 years ago by Robert Stojnic ▴ 80 • written 10.3 years ago by deepti anand ▴ 50

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1.6k

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rGADEM MotIV MotifDb rGADEM MotIV MotifDb

10.8 years ago Bahar ▴ 10

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1.5k

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Transcription MotifDb Transcription MotifDb

10.8 years ago Paul Shannon ▴ 470

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895

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MotifDb MotifDb

10.9 years ago T M ▴ 10

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1.4k

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rGADEM MotifDb rGADEM MotifDb

updated 11.8 years ago by José Luis Lavín ▴ 80 • written 11.8 years ago by Paul Shannon ▴ 750

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1.8k

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Transcription MotIV MotifDb Transcription MotIV MotifDb

updated 12.1 years ago by Jing Huang ▴ 380 • written 12.1 years ago by Paul Shannon ▴ 750

16 results • Page 1 of 1

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Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…

Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…

Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…

Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k

Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …

Votes

Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

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