Question: Please suggest any good motif Discovery tool in R-Bioconductor.
1
gravatar for vinod.acear
3.9 years ago by
vinod.acear40
India
vinod.acear40 wrote:

Hi 

Please suggest me some good motif discovery tool that should work on the mentioned data details.

I have certain number of sequences out of which a subset of sequences have have a common motif. 

motifdb motif meme • 1.7k views
ADD COMMENTlink modified 3.9 years ago by Hervé Pagès ♦♦ 14k • written 3.9 years ago by vinod.acear40
Answer: Please suggest any good motif Discovery tool in R-Bioconductor.
1
gravatar for Hervé Pagès
3.9 years ago by
Hervé Pagès ♦♦ 14k
United States
Hervé Pagès ♦♦ 14k wrote:

Have you tried any of the packages in the MotifDiscovery view?

http://bioconductor.org/packages/release/BiocViews.html#___MotifDiscovery

I would start by exploring these options. In particular motifRG and rGADEM look promising even though I have no particular experience with these tools...

H.

ADD COMMENTlink written 3.9 years ago by Hervé Pagès ♦♦ 14k
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