Please suggest any good motif Discovery tool in R-Bioconductor.
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vinod.acear ▴ 50
@vinodacear-8884
Last seen 17 months ago
India

Hi 

Please suggest me some good motif discovery tool that should work on the mentioned data details.

I have certain number of sequences out of which a subset of sequences have have a common motif. 

motif motifdb meme • 2.5k views
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@herve-pages-1542
Last seen 8 hours ago
Seattle, WA, United States

Have you tried any of the packages in the MotifDiscovery view?

http://bioconductor.org/packages/release/BiocViews.html#___MotifDiscovery

I would start by exploring these options. In particular motifRG and rGADEM look promising even though I have no particular experience with these tools...

H.

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