I am trying to use RCytoscape on an adjacency matrix. I converted adjacency matrix into a graphBAM object (dont really know if RCytoscape runs on that type of object but from what I read it should).
A graphBAM graph with directed edges
Number of Nodes = 130
Number of Edges = 147
cw <- new.CytoscapeWindow('ADJ', graph=g, host="localhost", rpcPort = 9000)
Error in function (type, msg, asError = TRUE) :
Failed to connect to localhost port 9000: Connection refused
I tried using port 9001 result is the same. I tried connecting to a different WIFI but result again did not change.
I also wanted to use downloaded version of the Cytoscape 3.3.0 but I couldnt convert my adjacency matrix into a viable input.
I would appreciate any help and thank you