I have mice microarray time course data. The study design as follows, mice were treated with two different kinds of drugs "a" and "b" for three time points day1, 2, 3, day0 is used as control for both the groups. Further we extracted the RNA from liver and performed microarray. Next we wanted to do WGCNA analysis. Since we are interested to check the correlation of genes with traits I have created categorical trait but not sure whether it is a right way of doing it or no. So kindly help me with this. I have attached the trait file please have a look.
I want to correlate the conditions with genes is it possible? My question is can I use it as a trait file???