clustering analysis of illumina microarray gene expression data
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@kritikamish99-9648
Last seen 3.8 years ago
India

Hi everyone

I want to know for cluster analysis of illumina microarray gene expression data (in idat format) which all the algorithms are used and which software are available ?

What i know is BHC from bioconductor can be used but i am not sure

any help?

Thanks!!!!!!!!!!!

clustering illumina microarray • 918 views
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@gordon-smyth
Last seen 1 hour ago
WEHI, Melbourne, Australia

Following on from your previous post "how to use idat file for analyses in bioconductor", have you tried

x <- read.idat(idatfiles, bgxfile)
y <- neqc(x)
plotMDS(y)

?

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@kritikamish99-9648
Last seen 3.8 years ago
India
No I didn't tried plotMDS
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