I'm trying to get the seqlm package running for a DMR analysis I'd like to conduct, first by simply running the example provided with the package, but am already getting an error I have no idea how to deal with.
After installing the required packages (and all dependencies), followed by
library(seqlm) data(tissue_small) segments = seqlm(values = tissue_small$values, genome_information = tissue_small$genome_information, annotation = tissue_small$annotation)
I get this error:
Error: 'as.vector' is not an exported object from 'namespace:IRanges'
Could this be a problem with some updated packages but not others? I don't even know what a namespace is!
sessionInfo below. Any help would be appreciated!
R version 3.3.1 (2016-06-21) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.5 (Yosemite) locale:  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  seqlm_0.1 devtools_1.12.0 BiocInstaller_1.22.3 loaded via a namespace (and not attached):  Rcpp_0.12.5 magrittr_1.5 XVector_0.12.0 GenomicRanges_1.24.2 BiocGenerics_0.18.0  zlibbioc_1.18.0 IRanges_2.6.1 munsell_0.4.3 lattice_0.20-33 colorspace_1.2-6  foreach_1.4.3 stringr_1.0.0 GenomeInfoDb_1.8.1 plyr_1.8.4 tools_3.3.1  parallel_3.3.1 grid_3.3.1 gtable_0.2.0 withr_1.0.2 iterators_1.0.8  digest_0.6.9 Matrix_1.2-6 reshape2_1.4.1 ggplot2_2.1.0 S4Vectors_0.10.2  codetools_0.2-14 memoise_1.0.0 stringi_1.1.1 scales_0.4.0 stats4_3.3.1