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Creation
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Rank
Views
Votes
Showing :
IRanges
•
reset
0
votes
0
replies
69
views
adding peptides to a multiple sequence alignment
msa
IRanges
Biostrings
23 days ago
Mario Dejung
• 0
0
votes
2
replies
498
views
how to plot iranges in r version 4.0.0?
IRanges
updated 11 weeks ago by
alekeuro
• 0 • written 2.6 years ago by
aissabenyoucef
• 0
2
votes
1
reply
370
views
Removing metadata rows containing NA values in GRanges
IRanges
GRanges
NA
updated 4 months ago by
ATpoint
★ 2.1k • written 4 months ago by
Timucin
• 0
1
vote
2
replies
769
views
IRanges vignette code comment
iranges
updated 7 months ago by
Kristopher Villa
• 0 • written 7.9 years ago by
Michael Love
39k
0
votes
3
replies
200
views
Extracting values from out-of-bounds Rle Views
IRanges
XVector
AtomicList
written 7 months ago by
Pierre-Luc Germain
▴ 20
1
vote
2
replies
464
views
Extracting Score/Coverage From GRange Object
IRanges
rtracklayer
GenomicRanges
9 months ago
vanbelj
▴ 20
2
votes
3
replies
444
views
slidingIRanges in IRanges ... odd behavior
IRanges
updated 2 days ago by
axelrhuber
• 0 • written 15 months ago by
story.benjamin
▴ 20
1
vote
2
replies
420
views
How to apply a function to a RleViesList object?
Views
IRanges
GRanges
RleList
updated 16 months ago by
Mike Smith
★ 5.9k • written 16 months ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
524
views
how to get genomic coordinates from an MIndex object
IRanges
MIndex
updated 18 months ago by
Michael Lawrence
11k • written 18 months ago by
Ann Loraine
▴ 110
1
vote
4
replies
761
views
IRanges::findOverlapPairs cannot take inputs if they are too large
IRanges
GenomicRanges
21 months ago
Yixin
• 0
1
vote
1
reply
429
views
mean coverage plot of IRanges / Granges object
IRanges
updated 22 months ago by
James W. MacDonald
62k • written 22 months ago by
n.mary
• 0
1
vote
2
replies
656
views
Question about nearest function in R package IRanges
nearest
IRanges
updated 23 months ago by
Julie Zhu
★ 4.3k • written 23 months ago by
junhui.li11
• 0
2
votes
3
replies
557
views
Recycling a DNAStringSet over an IRangesList in extractAt()
Biostrings
IRanges
2.1 years ago
Nicholas Cooley
• 0
1
vote
1
reply
659
views
GenomicRanges equivalent to bedtools cluster
IRanges
GenomicRanges
updated 2.2 years ago by
James W. MacDonald
62k • written 2.2 years ago by
kalamari
• 0
0
votes
1
reply
426
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR
granges
iranges
updated 2.3 years ago by
bernatgel
▴ 150 • written 2.7 years ago by
Angel Liang
• 0
0
votes
1
reply
509
views
How can i get repetitive elements genomic ranges in human genome?
repetitive elements
IRanges
GenomicRanges
BSgenome
updated 2.4 years ago by
James W. MacDonald
62k • written 2.4 years ago by
vinod.acear
▴ 50
0
votes
1
reply
453
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 2.6 years ago by
Aaron Lun
★ 28k • written 2.6 years ago by
lklei001
• 0
8
votes
10
replies
809
views
Compare ranges from two GRanges and check if the ranges from the first GRanges is contained in another.
GRanges
IRanges
updated 2.7 years ago by
James W. MacDonald
62k • written 2.7 years ago by
omarrafiqued
▴ 50
4
votes
6
replies
580
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
2.7 years ago
mirkocelii
▴ 40
0
votes
0
replies
398
views
No methods found in package Biobase for request: read.AnnotatedDataFrame
software error
biobase
Iranges
ArrayExpressHTS
2.9 years ago
Ed Siefker
▴ 230
8
votes
12
replies
4.0k
views
Intergenic coordinates with Genomic Feaures
genomicranges
genomicfeatures
iranges
updated 6 months ago by
mehdi
• 0 • written 7.9 years ago by
cookie
▴ 20
0
votes
0
replies
440
views
Is the ballgownrsem function still supported?
ballgown
rsem
iranges
3.1 years ago
YH
• 0
0
votes
4
replies
1.1k
views
IRanges: solving row 5: range cannot be determined from the supplied arguments (too many NAs)
IRanges
rtracklayer
updated 3.3 years ago by
James W. MacDonald
62k • written 3.3 years ago by
jovel_juan
▴ 10
0
votes
0
replies
417
views
DMDeepm6A: solve_user_SEW0", start, end, width, PACKAGE = "IRanges
rtracklayer
IRanges
DMDeepm6A
3.3 years ago
jovel_juan
▴ 10
0
votes
1
reply
1.6k
views
Error in IRanges, In range 1: 'end' must be >= 'start' - 1.: .Call2(\"solve_user_SEW0\", start, end, width, PACKAGE = \"IRanges\")"
Genomicranges
IRanges
updated 3.3 years ago by
James W. MacDonald
62k • written 3.3 years ago by
bioinagesh
• 0
0
votes
7
replies
881
views
Best way to subset one IRanges by list of IRanges
iranges
3.4 years ago
Robert M. Flight
▴ 280
1
vote
3
replies
878
views
Correct way to split and unsplit a DataFrame
s4vectors
iranges
updated 3.5 years ago by
Michael Lawrence
11k • written 3.5 years ago by
Michael Steinbaugh
▴ 70
0
votes
1
reply
426
views
Diffbind problems with negative widths in IRanges and chromosome ranges after dba.report
diffbind
IRanges
updated 3.5 years ago by
Rory Stark
★ 4.6k • written 3.5 years ago by
akutsch
• 0
0
votes
1
reply
513
views
Annotating protein sequences
Protein
iranges
sequencing
3.9 years ago
ieuangw
• 0
2
votes
2
replies
1.3k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
Momo
• 0
4
votes
2
replies
660
views
Speed efficient way to select the n-th element from GRangsList
R
GenomicRanges
IRanges
4.1 years ago
foehn
▴ 80
5
votes
8
replies
7.0k
views
Non overlapping granges (or opposite of subsetByOverlaps)
granges
genomicranges
iranges
subsetByOverlaps
updated 11 months ago by
b.simpson
• 0 • written 7.4 years ago by
vinod.acear
▴ 50
2
votes
1
reply
664
views
Bug in follow and precede
software error
genomicranges
iranges
updated 4.2 years ago by
Valerie Obenchain
★ 6.7k • written 4.2 years ago by
abc
• 0
0
votes
3
replies
632
views
GenomicRanges based on indices or more conditions, and add column from match
genomicranges
iranges
findoverlaps
4.3 years ago
francesca casalino
▴ 50
3
votes
3
replies
858
views
Gaia results including negative widths
gaia
genomicranges
iranges
updated 4.5 years ago by
Sandro Morganella
▴ 40 • written 4.5 years ago by
Talip Zengin
▴ 10
2
votes
1
reply
563
views
IRanges seqselect and subsetByRanges
Iranges
defunct
updated 4.5 years ago by
Michael Lawrence
11k • written 4.5 years ago by
joseluis.ruiz
• 0
0
votes
15
replies
1.3k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 4.5 years ago by
becker.gabriel
▴ 10 • written 4.5 years ago by
chokoiboko
• 0
0
votes
0
replies
627
views
IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown
rsem
iranges
4.5 years ago
kicheol.kim
• 0
1
vote
0
replies
1.6k
views
IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown
rsem
iranges
4.6 years ago • updated 4.5 years ago
kicheol.kim
• 0
0
votes
1
reply
697
views
TEQC - new version Bioc - problem with IRanges
teqc
iranges
updated 4.6 years ago by
m.hummel
▴ 10 • written 4.6 years ago by
msourdeix
• 0
0
votes
0
replies
574
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
4.6 years ago
endrebak85
▴ 30
2
votes
2
replies
1.4k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
4.6 years ago
GENOMIC_region
• 0
0
votes
1
reply
592
views
CNRegions gives error in IRanges Package
CNregions
iranges
iClusterPlus
4.7 years ago
sumonaray55
• 0
0
votes
2
replies
817
views
VariantAnnotation::locateVariants error coming from XVector
variantannotation
xvector
iranges
4.7 years ago
Vivek.b
▴ 100
2
votes
5
replies
3.8k
views
unlist doesn't work for IRanges
iranges
updated 4.7 years ago by
James W. MacDonald
62k • written 4.7 years ago by
li lilingdu
▴ 450
1
vote
2
replies
817
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 4.9 years ago by
Michael Lawrence
11k • written 4.9 years ago by
g.k
• 0
0
votes
5
replies
993
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 4.9 years ago by
Nicolas Servant
▴ 260 • written 4.9 years ago by
René Wiegandt
• 0
0
votes
1
reply
900
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa
iranges
updated 5.0 years ago by
UBodenhofer
▴ 290 • written 5.0 years ago by
mtorresp1975
• 0
0
votes
1
reply
733
views
Error in export ifelse from IRanges
iranges
ifelse
package
namespace
export
updated 5.1 years ago by
James W. MacDonald
62k • written 5.1 years ago by
dalibor.miklik
• 0
2
votes
2
replies
833
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment
packages
granges
iranges
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
rbronste
▴ 60
50 results • Page
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I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
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