23 days ago
Mario Dejung
•
0
0
votes
0
replies
69
views
0
votes
2
replies
498
views
updated 11 weeks ago by
alekeuro
•
0
•
written 2.6 years ago by
aissabenyoucef
•
0
2
votes
1
reply
370
views
1
vote
2
replies
769
views
updated 7 months ago by
Kristopher Villa
•
0
•
written 7.9 years ago by
Michael Love
39k
0
votes
3
replies
200
views
written 7 months ago by
Pierre-Luc Germain
▴
20
1
vote
2
replies
464
views
9 months ago
vanbelj
▴
20
2
votes
3
replies
444
views
updated 2 days ago by
axelrhuber
•
0
•
written 15 months ago by
story.benjamin
▴
20
1
vote
2
replies
420
views
updated 16 months ago by
Mike Smith
★
5.9k
•
written 16 months ago by
Assa Yeroslaviz
★
1.5k
2
votes
3
replies
524
views
updated 18 months ago by
Michael Lawrence
11k
•
written 18 months ago by
Ann Loraine
▴
110
1
vote
4
replies
761
views
1
vote
1
reply
429
views
updated 22 months ago by
James W. MacDonald
62k
•
written 22 months ago by
n.mary
•
0
1
vote
2
replies
656
views
updated 23 months ago by
Julie Zhu
★
4.3k
•
written 23 months ago by
junhui.li11
•
0
2
votes
3
replies
557
views
1
vote
1
reply
659
views
updated 2.2 years ago by
James W. MacDonald
62k
•
written 2.2 years ago by
kalamari
•
0
0
votes
1
reply
426
views
updated 2.3 years ago by
bernatgel
▴
150
•
written 2.7 years ago by
Angel Liang
•
0
0
votes
1
reply
509
views
updated 2.4 years ago by
James W. MacDonald
62k
•
written 2.4 years ago by
vinod.acear
▴
50
0
votes
1
reply
453
views
8
votes
10
replies
809
views
updated 2.7 years ago by
James W. MacDonald
62k
•
written 2.7 years ago by
omarrafiqued
▴
50
4
votes
6
replies
580
views
0
votes
0
replies
398
views
8
votes
12
replies
4.0k
views
0
votes
0
replies
440
views
0
votes
4
replies
1.1k
views
updated 3.3 years ago by
James W. MacDonald
62k
•
written 3.3 years ago by
jovel_juan
▴
10
0
votes
0
replies
417
views
0
votes
1
reply
1.6k
views
updated 3.3 years ago by
James W. MacDonald
62k
•
written 3.3 years ago by
bioinagesh
•
0
0
votes
7
replies
881
views
3.4 years ago
Robert M. Flight
▴
280
1
vote
3
replies
878
views
updated 3.5 years ago by
Michael Lawrence
11k
•
written 3.5 years ago by
Michael Steinbaugh
▴
70
0
votes
1
reply
426
views
updated 3.5 years ago by
Rory Stark
★
4.6k
•
written 3.5 years ago by
akutsch
•
0
0
votes
1
reply
513
views
3.9 years ago
ieuangw
•
0
2
votes
2
replies
1.3k
views
4
votes
2
replies
660
views
4.1 years ago
foehn
▴
80
5
votes
8
replies
7.0k
views
updated 11 months ago by
b.simpson
•
0
•
written 7.4 years ago by
vinod.acear
▴
50
2
votes
1
reply
664
views
updated 4.2 years ago by
Valerie Obenchain
★
6.7k
•
written 4.2 years ago by
abc
•
0
0
votes
3
replies
632
views
3
votes
3
replies
858
views
updated 4.5 years ago by
Sandro Morganella
▴
40
•
written 4.5 years ago by
Talip Zengin
▴
10
2
votes
1
reply
563
views
updated 4.5 years ago by
Michael Lawrence
11k
•
written 4.5 years ago by
joseluis.ruiz
•
0
0
votes
15
replies
1.3k
views
updated 4.5 years ago by
becker.gabriel
▴
10
•
written 4.5 years ago by
chokoiboko
•
0
0
votes
0
replies
627
views
1
vote
0
replies
1.6k
views
4.6 years ago • updated 4.5 years ago
kicheol.kim
•
0
0
votes
1
reply
697
views
0
votes
0
replies
574
views
2
votes
2
replies
1.4k
views
0
votes
1
reply
592
views
4.7 years ago
sumonaray55
•
0
0
votes
2
replies
817
views
2
votes
5
replies
3.8k
views
updated 4.7 years ago by
James W. MacDonald
62k
•
written 4.7 years ago by
li lilingdu
▴
450
1
vote
2
replies
817
views
0
votes
5
replies
993
views
updated 4.9 years ago by
Nicolas Servant
▴
260
•
written 4.9 years ago by
René Wiegandt
•
0
0
votes
1
reply
900
views
updated 5.0 years ago by
UBodenhofer
▴
290
•
written 5.0 years ago by
mtorresp1975
•
0
0
votes
1
reply
733
views
updated 5.1 years ago by
James W. MacDonald
62k
•
written 5.1 years ago by
dalibor.miklik
•
0
2
votes
2
replies
833
views
Recent ...
Replies
Answer: struggling to create a heatmap
by
ATpoint
★
2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★
2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★
2.1k
You can take over some of the lines from `results()` to find them easily:
```r
suppressPackageStartupMessages(library(DESeq2))
set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Awards
• All
Popular Question to
Ryan
•
0
Popular Question to
Guido Hooiveld
★
3.5k
Scholar to
James W. MacDonald
62k
Commentator to
Michael Love
39k
Popular Question to
twtoal
▴
10
Locations
• All
Germany, 30 minutes ago
WEHI, Melbourne, Australia, 40 minutes ago
Turkey, 54 minutes ago
Italy, 1 hour ago
Germany, 1 hour ago
Germany, 30 minutes ago
WEHI, Melbourne, Australia, 40 minutes ago
Turkey, 54 minutes ago
Italy, 1 hour ago
Germany, 1 hour ago
Traffic: 201 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6