These are the errors that appear on R studio 0.99.892 and R version 3.0.2 when I try to install "annaffy". I tried to repair it installing "GO.db" and "KEGG", but it continues:

2016-09-27 22:28:24 (2,37 MB/s) - “/tmp/RtmpWbKZXG/downloaded_packages/KEGG.db_2.10.1.tar.gz” guardado [2016567/2016567]

--2016-09-27 22:28:24--  http://bioconductor.org/packages/2.13/bioc/src/contrib/annaffy_1.34.0.tar.gz
Resolviendo bioconductor.org bioconductor.org)... 52.85.47.81, 52.85.47.46, 52.85.47.125, ...
Conectando con bioconductor.org bioconductor.org)[52.85.47.81]:80... conectado.
Petición HTTP enviada, esperando respuesta... 200 OK
Longitud: 224661 (219K) [application/x-gzip]
Grabando a: “/tmp/RtmpWbKZXG/downloaded_packages/annaffy_1.34.0.tar.gz”

     0K .......... .......... .......... .......... .......... 22% 2,25M 0s
    50K .......... .......... .......... .......... .......... 45% 2,44M 0s
   100K .......... .......... .......... .......... .......... 68% 2,33M 0s
   150K .......... .......... .......... .......... .......... 91% 1,97M 0s
   200K .......... .........                                  100% 3,25M=0,09s

2016-09-27 22:28:24 (2,30 MB/s) - “/tmp/RtmpWbKZXG/downloaded_packages/annaffy_1.34.0.tar.gz” guardado [224661/224661]

* installing *source* package ‘GO.db’ ...
** R
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
Error : .onLoad failed in loadNamespace() for 'GO.db', details:
  call: match.arg(synchronous, c("off", "normal", "full"))
  error: 'arg' must be NULL or a character vector
Error: loading failed
Ejecución interrumpida
ERROR: loading failed
* removing ‘/home/clara/R/x86_64-pc-linux-gnu-library/3.0/GO.db’
* installing *source* package ‘KEGG.db’ ...
** R
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
Error : .onLoad failed in loadNamespace() for 'KEGG.db', details:
  call: match.arg(synchronous, c("off", "normal", "full"))
  error: 'arg' must be NULL or a character vector
Error: loading failed
Ejecución interrumpida
ERROR: loading failed
* removing ‘/home/clara/R/x86_64-pc-linux-gnu-library/3.0/KEGG.db’
ERROR: dependencies ‘GO.db’, ‘KEGG.db’ are not available for package ‘annaffy’
* removing ‘/home/clara/R/x86_64-pc-linux-gnu-library/3.0/annaffy’

The downloaded source packages are in
    ‘/tmp/RtmpWbKZXG/downloaded_packages’
Mensajes de aviso perdidos
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘GO.db’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘KEGG.db’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘annaffy’ had non-zero exit status
4: installed directory not writable, cannot update packages 'XML', 'boot',
  'class', 'cluster', 'codetools', 'foreign', 'KernSmooth', 'lattice',
  'Matrix', 'mgcv', 'nlme', 'nnet', 'rpart', 'spatial', 'survival'

Thank you for your help.