I've been working with http://isac-net.org/PDFS/c2/c281b4c1-b834-4347-abe5-faa807dd5647.pdf in order to use it for my own data later on.
I have trouble with this part:
keyword_vars<-c("$FIL","Stim","Sample Order","EXPERIMENT NAME") #relevant keywords pd<-data.table(getKeywords(gating_set,keyword_vars)) #extract relevant keywords to a data table
earlier in the tutorial gating_set is created, but it is a GatingSet-object.
getKeywords expects it to be a flowWorkspace object.
How is the example working by calling a GatingSet instead of a flowWorkspace-object? It is not for me.
What am I missing?