News:List of Deprecated Packages for Bioc3.15
0
0
Entering edit mode
shepherl 4.1k
@lshep
Last seen 3 minutes ago
United States

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. This is the current list of deprecated packages for Bioc 3.15 :

Software:

User Requested:

  • caOmicsV
  • clonotypeR
  • GCSFileSystem
  • GCSConnection
  • genphen
  • ppiStats
  • ProteomicsAnnotationHubData
  • PSICQUIC
  • PubScore
  • Rgin
  • RpsiXML
  • ScISI
  • SLGI
  • Sushi

Unresponsive:

  • ABAEnrichment
  • Autotuner
  • CAnD
  • CHETAH
  • CountClust
  • diffloop
  • GenoGAM
  • gprege
  • Onassis
  • perturbatr
  • phemd
  • RmiR
  • tofsims
  • TSRchitect

ExperimentData

User Requested:

  • ppiData
  • DREAM4

Unresponsive:

  • MSstatsBioData

It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the bioc-devel@r-project.org mailing list.

Devel Deprecation Release Bioconductor • 1.5k views
ADD COMMENT
0
Entering edit mode

The workflow proteomics is also deprecated.

ADD REPLY
0
Entering edit mode

networkBMA is also deprecated

ADD REPLY
0
Entering edit mode

phemd has been fixed and will be undeprecated.

ADD REPLY
0
Entering edit mode

CHETAH has been fixed and will be undeprecated

ADD REPLY

Login before adding your answer.

Traffic: 711 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6